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Thsd7b thrombospondin type 1 domain containing 7B [ Rattus norvegicus (Norway rat) ]

Gene ID: 289007, updated on 21-Jul-2018

Summary

Official Symbol
Thsd7bprovided by RGD
Official Full Name
thrombospondin type 1 domain containing 7Bprovided by RGD
Primary source
RGD:1306938
See related
Ensembl:ENSRNOG00000003878
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306938
Expression
Biased expression in Brain (RPKM 23.5), Adrenal (RPKM 11.6) and 3 other tissues See more
Orthologs

Genomic context

See Thsd7b in Genome Data Viewer
Location:
13q13
Exon count:
29
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (46026943..46931619)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 13 NC_005112.3 (51235509..51905879) , (51943558..51990395)

Chromosome 13 - NC_005112.4Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene GABA(A) receptor-associated protein-like 2-like Neighboring gene mitochondrial ribosomal protein L30 Neighboring gene CD55 molecule

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
thrombospondin type-1 domain-containing protein 7B
Names
thrombospondin, type I, domain containing 7B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001191669.1NP_001178598.1  thrombospondin type-1 domain-containing protein 7B precursor

    See identical proteins and their annotated locations for NP_001178598.1

    Status: PROVISIONAL

    Source sequence(s)
    AABR07020915, AABR07020917, AABR07020919, AABR07020920, AABR07020921, AABR07020922, AABR07020924
    UniProtKB/TrEMBL
    F1LPD7
    Related
    ENSRNOP00000005212.5, ENSRNOT00000005212.5
    Conserved Domains (2) summary
    smart00209
    Location:12521302
    TSP1; Thrombospondin type 1 repeats
    cl15278
    Location:11321177
    TSP_1; Thrombospondin type 1 domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005112.4 Reference Rnor_6.0 Primary Assembly

    Range
    46026943..46931619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017598689.1XP_017454178.1  thrombospondin type-1 domain-containing protein 7B isoform X1

  2. XM_017598690.1XP_017454179.1  thrombospondin type-1 domain-containing protein 7B isoform X2

    UniProtKB/TrEMBL
    F1LPD7
    Conserved Domains (2) summary
    smart00209
    Location:12521302
    TSP1; Thrombospondin type 1 repeats
    cl15278
    Location:11321177
    TSP_1; Thrombospondin type 1 domain

Alternate Rn_Celera

Genomic

  1. AC_000081.1 Alternate Rn_Celera

    Range
    41268004..42021350
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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