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IGKV1D-42 immunoglobulin kappa variable 1D-42 (non-functional) [ Homo sapiens (human) ]

Gene ID: 28892, updated on 13-May-2022

Summary

Official Symbol
IGKV1D-42provided by HGNC
Official Full Name
immunoglobulin kappa variable 1D-42 (non-functional)provided by HGNC
Primary source
HGNC:HGNC:5757
See related
Ensembl:ENSG00000211633 IMGT/GENE-DB:IGKV1D-42; AllianceGenome:HGNC:5757
Gene type
other
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
L22; IGKV1D42
Summary
Predicted to be involved in immune response. Predicted to be located in plasma membrane. Predicted to be part of immunoglobulin complex. Predicted to be active in extracellular space. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

See IGKV1D-42 in Genome Data Viewer
Location:
2p11.2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (90190213..90190679)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (90745786..90746252)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (90229065..90229531)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene immunoglobulin kappa locus Neighboring gene immunoglobulin kappa variable 3D-11 Neighboring gene immunoglobulin kappa variable 2D-10 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-43 Neighboring gene immunoglobulin kappa variable 1D-8

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in immunoglobulin production IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of immunoglobulin complex IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_000833.2 

    Range
    58135..58601 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    90190213..90190679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    90745786..90746252
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)