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Mcoln1 mucolipin 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288371, updated on 6-Feb-2017
Official Symbol
Mcoln1provided by RGD
Official Full Name
mucolipin 1provided by RGD
Primary source
RGD:1308953
See related
Ensembl:ENSRNOG00000000975
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Orthologs
Location:
12p12
Exon count:
15
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2054629..2068682)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 12 NC_005111.3 (4216866..4230870)

Chromosome 12 - NC_005111.4Genomic Context describing neighboring genes Neighboring gene similar to FLJ35784 protein Neighboring gene zinc finger protein 358 Neighboring gene patatin-like phospholipase domain containing 6 Neighboring gene calmodulin regulated spectrin-associated protein family, member 3

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
NAADP-sensitive calcium-release channel activity IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 
autophagosome maturation ISO
Inferred from Sequence Orthology
more info
 
release of sequestered calcium ion into cytosol IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
lysosomal membrane IDA
Inferred from Direct Assay
more info
PubMed 
lysosomal membrane ISO
Inferred from Sequence Orthology
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
receptor complex IEA
Inferred from Electronic Annotation
more info
 
receptor complex ISO
Inferred from Sequence Orthology
more info
 

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105903.1NP_001099373.1  mucolipin-1

    See identical proteins and their annotated locations for NP_001099373.1

    Status: PROVISIONAL

    Source sequence(s)
    CH474084
    UniProtKB/TrEMBL
    D3ZRF9
    Related
    ENSRNOP00000001290, ENSRNOT00000001290
    Conserved Domains (1) summary
    pfam08016
    Location:388524
    PKD_channel; Polycystin cation channel

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005111.4 Reference Rnor_6.0 Primary Assembly

    Range
    2054629..2068682
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006248754.3XP_006248816.1  mucolipin-1 isoform X1

    Conserved Domains (1) summary
    PLN03223
    Location:457565
    PLN03223; Polycystin cation channel protein; Provisional
  2. XM_006248755.3XP_006248817.1  mucolipin-1 isoform X2

    Conserved Domains (1) summary
    PLN03223
    Location:442550
    PLN03223; Polycystin cation channel protein; Provisional
  3. XM_006248756.3XP_006248818.1  mucolipin-1 isoform X3

    Conserved Domains (1) summary
    pfam08016
    Location:403539
    PKD_channel; Polycystin cation channel

Alternate Rn_Celera

Genomic

  1. AC_000080.1 Alternate Rn_Celera

    Range
    3416808..3430691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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