Format

Send to:

Choose Destination

Gpr15 G protein-coupled receptor 15 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288181, updated on 4-Jun-2020

Summary

Official Symbol
Gpr15provided by RGD
Official Full Name
G protein-coupled receptor 15provided by RGD
Primary source
RGD:1306639
See related
Ensembl:ENSRNOG00000039680
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Brain (RPKM 7.8), Spleen (RPKM 5.7) and 4 other tissues See more
Orthologs

Genomic context

See Gpr15 in Genome Data Viewer
Location:
11q12
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (43992739..44004189)
106 current Rn_Celera (GCF_000002265.2) 11 AC_000079.1 (41697724..41699809)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 11 NC_005110.3 (47191271..47193356)

Chromosome 11 - NC_005110.4Genomic Context describing neighboring genes Neighboring gene similar to olfactory receptor 173 Neighboring gene claudin domain containing 1 Neighboring gene coproporphyrinogen oxidase Neighboring gene similar to CG4349-PA

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Pathways from PubChem

General gene information

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
G protein-coupled receptor activity ISO
Inferred from Sequence Orthology
more info
 
coreceptor activity ISO
Inferred from Sequence Orthology
more info
 
virus receptor activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
G protein-coupled receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
T cell migration ISO
Inferred from Sequence Orthology
more info
 
viral entry into host cell ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
endosome ISO
Inferred from Sequence Orthology
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
G-protein coupled receptor 15

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105890.1NP_001099360.1  G-protein coupled receptor 15

    See identical proteins and their annotated locations for NP_001099360.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473967
    UniProtKB/TrEMBL
    D4AA67
    Related
    ENSRNOP00000002258.4, ENSRNOT00000002258.5
    Conserved Domains (1) summary
    pfam00001
    Location:50302
    7tm_1; 7 transmembrane receptor (rhodopsin family)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005110.4 Reference Rnor_6.0 Primary Assembly

    Range
    43992739..44004189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017597937.1XP_017453426.1  G-protein coupled receptor 15 isoform X1

    UniProtKB/TrEMBL
    D4AA67
    Conserved Domains (1) summary
    pfam00001
    Location:50302
    7tm_1; 7 transmembrane receptor (rhodopsin family)

Alternate Rn_Celera

Genomic

  1. AC_000079.1 Alternate Rn_Celera

    Range
    41697724..41699809
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center