Format

Send to:

Choose Destination

Senp7 SUMO specific peptidase 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 288167, updated on 2-Oct-2018

Summary

Official Symbol
Senp7provided by RGD
Official Full Name
SUMO specific peptidase 7provided by RGD
Primary source
RGD:1305510
See related
Ensembl:ENSRNOG00000001616
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Thymus (RPKM 125.3), Spleen (RPKM 74.4) and 9 other tissues See more
Orthologs

Genomic context

See Senp7 in Genome Data Viewer
Location:
11q12
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (46880928..47047052, complement)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 11 NC_005110.3 (50062235..50210519, complement)

Chromosome 11 - NC_005110.4Genomic Context describing neighboring genes Neighboring gene transmembrane protein 45A Neighboring gene ribosomal protein S27a, pseudogene 22 Neighboring gene protein TFG-like Neighboring gene uncharacterized LOC102552047 Neighboring gene tRNA methyltransferase 10C, mitochondrial RNase P subunit Neighboring gene PEST proteolytic signal containing nuclear protein

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
SUMO-specific endopeptidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
protein desumoylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
intracellular ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
sentrin-specific protease 7
Names
SUMO-1-specific protease 2
SUMO1/sentrin specific peptidase 7
SUMO1/sentrin specific protease 7
Sumo1/sentrin/SMT3 specific peptidase 7
sentrin/SUMO-specific protease SENP7
NP_001099358.1
XP_006248306.1
XP_006248309.1
XP_006248310.1
XP_017453420.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105888.1NP_001099358.1  sentrin-specific protease 7

    See identical proteins and their annotated locations for NP_001099358.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473967
    UniProtKB/Swiss-Prot
    D3ZF42
    Related
    ENSRNOP00000043376.3, ENSRNOT00000044177.3
    Conserved Domains (1) summary
    cl23802
    Location:761998
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005110.4 Reference Rnor_6.0 Primary Assembly

    Range
    46880928..47047052 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006248244.3XP_006248306.1  sentrin-specific protease 7 isoform X1

    Conserved Domains (1) summary
    cl23802
    Location:7671004
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
  2. XM_006248248.3XP_006248310.1  sentrin-specific protease 7 isoform X4

    Conserved Domains (1) summary
    cl23802
    Location:637874
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
  3. XM_006248247.3XP_006248309.1  sentrin-specific protease 7 isoform X3

    Conserved Domains (1) summary
    cl23802
    Location:701938
    Peptidase_C48; Ulp1 protease family, C-terminal catalytic domain
  4. XM_017597931.1XP_017453420.1  sentrin-specific protease 7 isoform X2

Alternate Rn_Celera

Genomic

  1. AC_000079.1 Alternate Rn_Celera

    Range
    44175376..44315364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center