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Mtnap1 mitochondrial nucleoid associated protein 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 287798, updated on 3-Apr-2024

Summary

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Official Symbol
Mtnap1provided by RGD
Official Full Name
mitochondrial nucleoid associated protein 1provided by RGD
Primary source
RGD:1359207
See related
Ensembl:ENSRNOG00000024780 AllianceGenome:RGD:1359207
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C17orf80 (chromosome 17 open reading frame 80). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Testes (RPKM 90.8), Thymus (RPKM 30.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
10q32.1
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (99227522..99237838)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (98728661..98738693)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (102199837..102210769)

Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 39, member 11 Neighboring gene somatostatin receptor 2 Neighboring gene component of oligomeric golgi complex 1 Neighboring gene VCP nuclear cofactor family member 1 Neighboring gene cleavage and polyadenylation specific factor 4-like Neighboring gene CDC42 effector protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC95088, MGC95210, MGC116358

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in cell population proliferation ISO
Inferred from Sequence Orthology
more info
  
involved_in mitochondrial DNA metabolic process ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of mitochondrial DNA replication ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in mitochondrial nucleoid ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
uncharacterized protein C17orf80 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001393908.1 → NP_001380837.1  uncharacterized protein C17orf80 homolog

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000010
    UniProtKB/TrEMBL
    A0A8I6ADE6, A0A8I6AET6, Q66H31
    Related
    ENSRNOP00000090985.1, ENSRNOT00000117525.1

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086028.1 Reference GRCr8

    Range
    99227522..99237838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063268770.1 → XP_063124840.1  uncharacterized protein C17orf80 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6ABB9

  2. XM_063268769.1 → XP_063124839.1  uncharacterized protein C17orf80 homolog isoform X2

  3. XM_063268772.1 → XP_063124842.1  uncharacterized protein C17orf80 homolog isoform X4

    UniProtKB/TrEMBL
    A0A8I6AET6, Q66H31

  4. XM_063268774.1 → XP_063124844.1  uncharacterized protein C17orf80 homolog isoform X5

    UniProtKB/TrEMBL
    A6HKG8

  5. XM_063268768.1 → XP_063124838.1  uncharacterized protein C17orf80 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6ABB9

  6. XM_008768330.4 → XP_008766552.1  uncharacterized protein C17orf80 homolog isoform X4

    See identical proteins and their annotated locations for XP_008766552.1

    UniProtKB/TrEMBL
    A0A8I6ADE6, A0A8I6AET6, Q66H31

  7. XM_063268771.1 → XP_063124841.1  uncharacterized protein C17orf80 homolog isoform X3

  8. XM_063268775.1 → XP_063124845.1  uncharacterized protein C17orf80 homolog isoform X5

    UniProtKB/TrEMBL
    A6HKG8

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005532.3: Suppressed sequence

    Description
    NM_001005532.3: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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