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RPS27A ribosomal protein S27a [ Bos taurus (domestic cattle) ]

Gene ID: 286839, updated on 17-Aug-2024

Summary

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Official Symbol
RPS27Aprovided by VGNC
Official Full Name
ribosomal protein S27aprovided by VGNC
Primary source
VGNC:VGNC:34135
See related
BGD:BT19854; Ensembl:ENSBTAG00000015473
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 11 NC_037338.1 (37970478..37972642)

Chromosome 11 - NC_037338.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101902504 Neighboring gene clathrin heavy chain linker domain containing 1 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene mitochondrial translational initiation factor 2 Neighboring gene uncharacterized LOC132346575

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037338.1 Chromosome 11 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Tetrameric Assembly of Monoubiquitin Accurately Mimics the Lys11 Polyubiquitin Chain Structure. Levin-Kravets O, et al. Biochemistry, 2015 Aug 4. PMID 26171660
  2. Mechanism of ubiquitin recognition by the CUE domain of Vps9p. Prag G, et al. Cell, 2003 May 30. PMID 12787502
  3. Ribosomal S27a coding sequences upstream of ubiquitin coding sequences in the genome of a pestivirus. Becher P, et al. J Virol, 1998 Nov. PMID 9765411, Free PMC Article
  4. A single MIU motif of MINDY-1 recognizes K48-linked polyubiquitin chains. Kristariyanto YA, et al. EMBO Rep, 2017 Mar. PMID 28082312, Free PMC Article
  5. Characterization of gene expression profiles in early bovine pregnancy using a custom cDNA microarray. Ishiwata H, et al. Mol Reprod Dev, 2003 May. PMID 12658628

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in modification-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-ribosomal protein eS31 fusion protein
Names
40S ribosomal protein S27a
ubiquitin carboxyl extension protein 80
ubiquitin-40S ribosomal protein S27a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174778.1 → NP_777203.1  ubiquitin-ribosomal protein eS31 fusion protein

    See identical proteins and their annotated locations for NP_777203.1

    Status: PROVISIONAL

    Source sequence(s)
    AF058700
    UniProtKB/Swiss-Prot
    P0CG52, P62992
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01599
    Location:103 → 147
    Ribosomal_S27; Ribosomal protein S27a

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037338.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    37970478..37972642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005212558.4 → XP_005212615.1  ubiquitin-ribosomal protein eS31 fusion protein isoform X1

    See identical proteins and their annotated locations for XP_005212615.1

    UniProtKB/Swiss-Prot
    P0CG52, P62992
    Related
    ENSBTAP00000061054.2, ENSBTAT00000075075.2
    Conserved Domains (2) summary
    cd01803
    Location:1 → 76
    Ubl_ubiquitin; ubiquitin-like (Ubl) domain found in ubiquitin
    pfam01599
    Location:103 → 147
    Ribosomal_S27; Ribosomal protein S27a
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P62992.2 GenPept UniProtKB/Swiss-Prot:P62992

Gene LinkOut

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