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BCORP1 BCL6 corepressor pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 286554, updated on 25-Jan-2022

Summary

Official Symbol
BCORP1provided by HGNC
Official Full Name
BCL6 corepressor pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:23953
See related
Ensembl:ENSG00000215580 AllianceGenome:HGNC:23953
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BCORL2
Expression
Low expression observed in reference dataset See more
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Genomic context

See BCORP1 in Genome Data Viewer
Location:
Yq11.222
Exon count:
11
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) Y NC_000024.10 (19455431..19503153, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) Y NC_000024.9 (21617317..21665039, complement)

Chromosome Y - NC_000024.10Genomic Context describing neighboring genes Neighboring gene testis-specific transcript, Y-linked 14 Neighboring gene RNA, U6 small nuclear 255, pseudogene Neighboring gene glyceraldehyde 3 phosphate dehydrogenase pseudogene 19 Neighboring gene BCL-6 corepressor pseudogene Neighboring gene uncharacterized LOC105377223 Neighboring gene taxilin gamma pseudogene, Y-linked

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • BCL-6 corepressor pseudogene 1
  • BCL-6 corepressor-like protein 2
  • BCL6 co-repressor pseudogene
  • BCL6 co-repressor-like 2
  • BCL6 corepressor-like 2
  • BCoR-like protein 2
  • putative BCoR-like protein 2

Clone Names

  • FLJ39821

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
putative BCoR-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002923.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon, compared to variant 1.
    Source sequence(s)
    AC010137, AK097140
    Related
    ENST00000441139.5
  2. NR_033732.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC010137, BC063452

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000024.10 Reference GRCh38.p13 Primary Assembly

    Range
    19455431..19503153 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_002921.1: Suppressed sequence

    Description
    NG_002921.1: This RefSeq was permanently suppressed because the locus type was changed from pseudogene to transcribed pseudogene.
  2. NM_001173413.1: Suppressed sequence

    Description
    NM_001173413.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  3. NM_173700.1: Suppressed sequence

    Description
    NM_173700.1: This RefSeq was permanently suppressed because the locus type was changed from protein coding gene to pseudogene.
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