Format

Send to:

Choose Destination

FIRRE firre intergenic repeating RNA element [ Homo sapiens (human) ]

Gene ID: 286467, updated on 12-Oct-2019

Summary

Official Symbol
FIRREprovided by HGNC
Official Full Name
firre intergenic repeating RNA elementprovided by HGNC
Primary source
HGNC:HGNC:49627
See related
Ensembl:ENSG00000213468 MIM:300999
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01200
Summary
This gene produces a long RNA containing a repeating sequence. This RNA interacts with heterogeneous nuclear ribonucleoprotein U and coats chromosomes, where it plays an important role in the maintenance of repressive chromatin. This transcript can also act post-transcriptionally to regulate the stability of mRNAs during the innate immune response. [provided by RefSeq, Dec 2017]
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See FIRRE in Genome Data Viewer
Location:
Xq26.2
Exon count:
14
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (131691525..131830643, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (130836678..130964671, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene olfactory receptor family 2 subfamily AF member 1 pseudogene Neighboring gene heparin binding growth factor pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 5272 Neighboring gene Sharpr-MPRA regulatory region 4069 Neighboring gene MAPK regulated corepressor interacting protein 2 pseudogene 1 Neighboring gene PNKD pseudogene 1 Neighboring gene RNA, 5S ribosomal pseudogene 514 Neighboring gene serine/threonine kinase 26 Neighboring gene FERM domain containing 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • functional intergenic repeating RNA element

Clone Names

  • FLJ40592

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026975.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL008629, AL121572, AL365256
    Related
    ENST00000427391.2
  2. NR_152876.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AL008629, AL121572, AL365256
    Related
    ENST00000654978.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    131691525..131830643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center