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H2BFM H2B histone family member M [ Homo sapiens (human) ]

Gene ID: 286436, updated on 17-Jun-2019

Summary

Official Symbol
H2BFMprovided by HGNC
Official Full Name
H2B histone family member Mprovided by HGNC
Primary source
HGNC:HGNC:27867
See related
Ensembl:ENSG00000101812
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Histones are basic nuclear proteins that are responsible for the nucleosome structure of the chromosomal fiber in eukaryotes. Two molecules of each of the four core histones (H2A, H2B, H3, and H4) form an octamer, around which approximately 146 bp of DNA is wrapped in repeating units, called nucleosomes. The linker histone, H1, interacts with linker DNA between nucleosomes and functions in the compaction of chromatin into higher order structures. This gene encodes a replication-independent histone that is a member of the H2B histone family. [provided by RefSeq, Nov 2015]
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See H2BFM in Genome Data Viewer
Location:
Xq22.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20190607 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (104039753..104042454)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (103294516..103297021)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987334 Neighboring gene H2B histone family member W, testis specific Neighboring gene uncharacterized LOC107985662 Neighboring gene H2B histone family member M pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

  • Alcoholism, organism-specific biosystem (from KEGG)
    Alcoholism, organism-specific biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
  • Alcoholism, conserved biosystem (from KEGG)
    Alcoholism, conserved biosystemAlcoholism, also called dependence on alcohol (ethanol), is a chronic relapsing disorder that is progressive and has serious detrimental health outcomes. As one of the primary mediators of the reward...
  • Systemic lupus erythematosus, organism-specific biosystem (from KEGG)
    Systemic lupus erythematosus, organism-specific biosystemSystemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and cert...
  • Systemic lupus erythematosus, conserved biosystem (from KEGG)
    Systemic lupus erythematosus, conserved biosystemSystemic lupus erythematosus (SLE) is a prototypic autoimmune disease characterised by the production of IgG autoantibodies that are specific for self-antigens, such as DNA, nuclear proteins and cert...
  • Viral carcinogenesis, organism-specific biosystem (from KEGG)
    Viral carcinogenesis, organism-specific biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...
  • Viral carcinogenesis, conserved biosystem (from KEGG)
    Viral carcinogenesis, conserved biosystemThere is a strong association between viruses and the development of human malignancies. We now know that at least six human viruses, Epstein-Barr virus (EBV), hepatitis B virus (HBV), hepatitis C vi...

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
nucleosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleosome IEA
Inferred from Electronic Annotation
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
histone H2B type F-M
Names
H2B/s
histone H2B.s

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164416.1NP_001157888.1  histone H2B type F-M

    See identical proteins and their annotated locations for NP_001157888.1

    Status: REVIEWED

    Source sequence(s)
    AC234782, AI018051, AK093522
    Consensus CDS
    CCDS55468.1
    UniProtKB/Swiss-Prot
    P0C1H6
    UniProtKB/TrEMBL
    W0TYI6
    Related
    ENSP00000347119.3, ENST00000355016.7
    Conserved Domains (2) summary
    pfam00125
    Location:14124
    Histone; Core histone H2A/H2B/H3/H4
    cl23830
    Location:58145
    H2B; Histone H2B

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    104039753..104042454
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011530922.2XP_011529224.1  histone H2B type F-M isoform X1

    See identical proteins and their annotated locations for XP_011529224.1

    UniProtKB/Swiss-Prot
    P0C1H6
    UniProtKB/TrEMBL
    W0TYI6
    Related
    ENSP00000482611.1, ENST00000598335.2
    Conserved Domains (2) summary
    pfam00125
    Location:14124
    Histone; Core histone H2A/H2B/H3/H4
    cl23830
    Location:58145
    H2B; Histone H2B
  2. XM_006724640.2XP_006724703.1  histone H2B type F-M isoform X1

    See identical proteins and their annotated locations for XP_006724703.1

    UniProtKB/Swiss-Prot
    P0C1H6
    UniProtKB/TrEMBL
    W0TYI6
    Conserved Domains (2) summary
    pfam00125
    Location:14124
    Histone; Core histone H2A/H2B/H3/H4
    cl23830
    Location:58145
    H2B; Histone H2B
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