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capD capsular polysaccharide synthesis enzyme [ Staphylococcus aureus subsp. aureus MRSA252 ]

Gene ID: 2861343, discontinued on 3-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
capD
Gene description
capsular polysaccharide synthesis enzyme
Locus tag
SAR0154
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Staphylococcus aureus subsp. aureus MRSA252 (strain: MRSA252, sub-species: aureus MRSA252)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus
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Genomic Sequence:
NC_002952.2

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: 170842-170910,
    , 170944-171000,
    , 171043-171111,
    , 171124-171192 4 probable transmembrane helices predicted for SAR0154 by TMHMM2.0 at aa 10-32, 44-62, 77-99 and 104-126
  • Loc: 171055-172611 Pfam match to entry PF02719 Polysacc_synt_2, Polysaccharide biosynthesis protein, score 1243.80, E-value 0
Names
capsular polysaccharide synthesis enzyme
YP_039619.1
  • Highly similar to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap5D TR:P95698 (EMBL:U81973) (607 aa) fasta scores: E(): 1.5e-214, 99.012% id in 607 aa, and to Staphylococcus aureus capsular polysaccharide synthesis enzyme Cap8D TR:P72370 (EMBL:U73374) (607 aa) fasta scores: E(): 8.4e-214, 98.682% id in 607 aa

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002952.2 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_039619.1 capsular polysaccharide synthesis enzyme [Staphylococcus aureus subsp. aureus MRSA252]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GKF3.1