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TRBV5-3 T cell receptor beta variable 5-3 (non-functional) [ Homo sapiens (human) ]

Gene ID: 28612, updated on 2-Sep-2022

Summary

Official Symbol
TRBV5-3provided by HGNC
Official Full Name
T cell receptor beta variable 5-3 (non-functional)provided by HGNC
Primary source
HGNC:HGNC:12220
See related
Ensembl:ENSG00000211715 IMGT/GENE-DB:TRBV5-3; AllianceGenome:HGNC:12220
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRBV53; TCRBV5S3; TCRBV5S5P
Summary
Predicted to be involved in cell surface receptor signaling pathway. Predicted to be part of T cell receptor complex. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Annotation information
Annotation category: partial on reference assembly
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Genomic context

See TRBV5-3 in Genome Data Viewer
Location:
7q34
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (142389202..142389668)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (143725917..143726383)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (142242281..142242747, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene T cell receptor beta locus Neighboring gene T cell receptor beta variable 7-3 Neighboring gene T cell receptor beta variable 8-2 (pseudogene) Neighboring gene T cell receptor beta variable 10-1 Neighboring gene T cell receptor beta variable 9

Genomic regions, transcripts, and products

General gene information

Markers

Other Names

  • T cell receptor beta variable 5-3 pseudogene

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in adaptive immune response IEA
Inferred from Electronic Annotation
more info
 
involved_in cell surface receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
part_of T cell receptor complex IEA
Inferred from Electronic Annotation
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_001333.2 

    Range
    203911..204377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    142389202..142389668
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187562.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    372793..373259
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    143725917..143726383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)