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SAR1448 transporter protein [ Staphylococcus aureus subsp. aureus MRSA252 ]

Gene ID: 2860515, discontinued on 3-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
SAR1448
Gene description
transporter protein
Locus tag
SAR1448
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Staphylococcus aureus subsp. aureus MRSA252 (strain: MRSA252, sub-species: aureus MRSA252)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus
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Genomic Sequence:
NC_002952.2

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: c1536880-1535531 Pfam match to entry PF00083 sugar_tr, Sugar (and other) transporter, score -97.30, E-value 0.0026
  • Loc: c1536883-1536815, ~, c1536772-1536704, ~, c1536667-1536599, ~, c1536589-1536521, ~, c1536502-1536434, ~, c1536424-1536365, ~, c1536304-1536251, ~, c1536238-1536170, ~, c1536109-1536041, ~, c1536013-1535954, ~, c1535920-1535861, ~, c1535851-1535783, ~, c1535722-1535654, ~, c1535626-1535558 14 probable transmembrane helices predicted for SAR1448 by TMHMM2.0 at aa 13-35, 50-72, 85-107, 111-133, 140-162, 166-185, 206-223, 228-250, 271-293, 303-322, 334-353, 357-379, 400-422 and 432-454
Names
transporter protein
YP_040850.1
  • Similar to Mycobacterium tuberculosis hypothetical protein MTCY98.02c TR:P71879 (EMBL:Z79702) (537 aa) fasta scores: E(): 2.6e-25, 28.883% id in 412 aa, and to Rhizobium loti transmembrane efflux protein MLL5686 TR:BAB52087 (EMBL:AP003007) (502 aa) fasta scores: E(): 1.6e-24, 27.470% id in 415 aa. Similar to SAR0109, 71.082% identity (71.082% ungapped) in 453 aa overlap, and to SAR2534, 57.204% identity (58.079% ungapped) in 465 aa overlap

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002952.2 Reference assembly

    Range
    1535528..1536919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_040850.1 transporter protein [Staphylococcus aureus subsp. aureus MRSA252]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GGX2.1