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FAM86B3P family with sequence similarity 86 member B3, pseudogene [ Homo sapiens (human) ]

Gene ID: 286042, updated on 8-Nov-2023

Summary

Official Symbol
FAM86B3Pprovided by HGNC
Official Full Name
family with sequence similarity 86 member B3, pseudogeneprovided by HGNC
Gene description
family with sequence similarity 86, member A pseudogene
Primary source
HGNC:HGNC:44371
See related
Ensembl:ENSG00000291049 AllianceGenome:HGNC:44371
Gene type
pseudo
RefSeq status
PROVISIONAL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See FAM86B3P in Genome Data Viewer
Location:
8p23.1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (8228570..8244865)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (11498768..11515065, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (8086092..8102387)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 85 member B Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:7985495-7986158 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr8:7986822-7987484 Neighboring gene small nuclear ribonucleoprotein polypeptide C pseudogene 17 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:7998075-7998630 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:7998631-7999184 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:8024368-8025196 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:8025197-8026026 Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:8032372-8033096 Neighboring gene ReSE screen-validated silencer GRCh37_chr8:8038385-8038619 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr8:8039463-8040118 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:8040119-8040774 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:8051667-8052173 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:8052174-8052679 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18891 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26962 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8090135-8091040 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8093271-8093782 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8094341-8094892 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8094893-8095443 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26963 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr8:8101423-8102622 Neighboring gene ALG1 like 13, pseudogene Neighboring gene Sharpr-MPRA regulatory region 6714 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26964 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26965 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8145864-8146364 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr8:8153089-8154288 Neighboring gene uncharacterized LOC124901879 Neighboring gene PEAK1 related, kinase-activating pseudokinase 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26966 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:8219633-8220832 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18894 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8233601-8234540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8238570-8239092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:8239093-8239613 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 18895 Neighboring gene uncharacterized LOC105379222 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr8:8256091-8256704

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • family with sequence similarity 86, member A pseudogene

Clone Names

  • FLJ10661, FLJ60033

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024361.1 RNA Sequence

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (2) contains an alternate segment in the 3' region, as compared to variant 1.
    Source sequence(s)
    AC068020
    Related
    ENST00000522601.5
  2. NR_024362.1 RNA Sequence

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC068020
  3. NR_024363.1 RNA Sequence

    Status: PROVISIONAL

    Description
    Transcript Variant: This variant (3) lacks internal exons and has an alternate exon at the 3' terminus, as compared to variant 1.
    Source sequence(s)
    AC068020
    Related
    ENST00000588728.5

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    8228570..8244865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_018654717.1 Reference GRCh38.p14 PATCHES

    Range
    5103000..5119295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    11498768..11515065 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)