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icaD intercellular adhesion protein D [ Staphylococcus aureus subsp. aureus MRSA252 ]

Gene ID: 2859658, discontinued on 3-Feb-2015
  • All Gene records for this genome have been discontinued due to a change in scope for prokaryotic genomes in Gene. At the time this Gene record was discontinued, the RefSeq genome was re-annotated with the following features at this location:
Gene symbol
icaD
Gene description
intercellular adhesion protein D
Locus tag
SAR2748
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Staphylococcus aureus subsp. aureus MRSA252 (strain: MRSA252, sub-species: aureus MRSA252)
Lineage
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus
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Genomic Sequence:
NC_002952.2

Go to nucleotide: Graphics FASTA GenBank

GeneRIFs: Gene References Into Functions

Miscellaneous features

  • Loc: 2853345-2853413,
    , 2853486-2853554 2 probable transmembrane helices predicted for SAR2748 by TMHMM2.0 at aa 24-46 and 71-93
Names
intercellular adhesion protein D
YP_042086.1
  • Previously sequenced as Staphylococcus aureus intercellular adhesion protein D IcaD TR:Q9RQP8 (EMBL:AF086783) (101 aa) fasta scores: E(): 5.7e-38, 98.02% id in 101 aa. Similar to Staphylococcus caprae intercellular adhesion protein D IcaD TR:Q9AIQ7 (EMBL:AF246926) (101 aa) fasta scores: E(): 2.8e-25, 65.34% id in 101 aa

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002952.2 Reference assembly

    Range
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_042086.1 intercellular adhesion protein D [Staphylococcus aureus subsp. aureus MRSA252]

    Status: PROVISIONAL

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6GDD7.1