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SNHG15 small nucleolar RNA host gene 15 [ Homo sapiens (human) ]

Gene ID: 285958, updated on 28-Nov-2021

Summary

Official Symbol
SNHG15provided by HGNC
Official Full Name
small nucleolar RNA host gene 15provided by HGNC
Primary source
HGNC:HGNC:27797
See related
Ensembl:ENSG00000232956
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C7orf40; MYO1GUT; Linc-Myo1g
Summary
This gene represents a snoRNA host gene that produces a short-lived long non-coding RNA. This non-coding RNA is upregulated in tumor cells and may contribute to cell proliferation by acting as a sponge for microRNAs. [provided by RefSeq, Dec 2017]
Expression
Ubiquitous expression in bone marrow (RPKM 27.7), ovary (RPKM 10.8) and 24 other tissues See more
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Genomic context

See SNHG15 in Genome Data Viewer
Location:
7p13
Exon count:
5
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 7 NC_000007.14 (44983023..44986696, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (45022622..45026295, complement)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein S23 pseudogene 1 Neighboring gene myosin IG Neighboring gene uncharacterized LOC102723334 Neighboring gene small nucleolar RNA, H/ACA box 9 Neighboring gene CCM2 scaffold protein Neighboring gene NAC alpha domain containing

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • MYO1G upstream transcript
  • small nucleolar RNA host gene 15 (non-protein coding)

Clone Names

  • FLJ38860

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003697.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AA767840, AC004847, BC092459, DB280360
    Related
    ENST00000578968.5
  2. NR_152594.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AA767840, CD639046, DB450983
    Related
    ENST00000580458.5
  3. NR_152595.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC004847
    Related
    ENST00000579383.5
  4. NR_152596.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC004847
    Related
    ENST00000585030.5
  5. NR_152597.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AA488149, AA767840, AC004847, DB450983

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p13 Primary Assembly

    Range
    44983023..44986696 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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