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MROCKI MARCKS cis regulating lncRNA promoter of cytokines and inflammation [ Homo sapiens (human) ]

Gene ID: 285758, updated on 17-Sep-2024

Summary

Official Symbol
MROCKIprovided by HGNC
Official Full Name
MARCKS cis regulating lncRNA promoter of cytokines and inflammationprovided by HGNC
Primary source
HGNC:HGNC:50323
See related
Ensembl:ENSG00000227502 AllianceGenome:HGNC:50323
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ROCKI; LINC01268
Expression
Broad expression in small intestine (RPKM 2.4), duodenum (RPKM 1.9) and 17 other tissues See more
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Genomic context

See MROCKI in Genome Data Viewer
Location:
6q21
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (113868013..113873347, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (115052224..115057552, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (114189178..114194512, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901547 Neighboring gene Sharpr-MPRA regulatory region 13716 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17486 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24971 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24972 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:114177679-114178224 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:114178225-114178768 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17487 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:114180401-114180944 Neighboring gene myristoylated alanine rich protein kinase C substrate Neighboring gene uncharacterized LOC124901382 Neighboring gene long intergenic non-protein coding RNA 2880

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 1268
  • regulator of cytokines and inflammation

Clone Names

  • FLJ14368

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038863.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BC037331, FO393415
    Related
    ENST00000434296.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    113868013..113873347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    115052224..115057552 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)