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BASP1-AS1 BASP1 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 285696, updated on 25-Jan-2022

Summary

Official Symbol
BASP1-AS1provided by HGNC
Official Full Name
BASP1 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:26609
See related
Ensembl:ENSG00000215196 AllianceGenome:HGNC:26609
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See BASP1-AS1 in Genome Data Viewer
Location:
5p15.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (17130028..17217422, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (17130137..17217531, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene myosin X Neighboring gene ribosomal protein S26 pseudogene 28 Neighboring gene RNA, U6 small nuclear 660, pseudogene Neighboring gene uncharacterized LOC105374664 Neighboring gene RNA, 5S ribosomal pseudogene 180 Neighboring gene microRNA 10522 Neighboring gene DDB1 and CUL4 associated factor 13 pseudogene 2 Neighboring gene RNA, U6 small nuclear 1003, pseudogene Neighboring gene brain abundant membrane attached signal protein 1 Neighboring gene BASP1-FTH1P10 intergenic CAGE-defined low expression enhancer

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association of mood-incongruent psychotic bipolar disorder.
EBI GWAS Catalog
Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • FLJ34047, FLJ43202, AC091878.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027253.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AC091878, AK091366
    Related
    ENST00000399760.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    17130028..17217422 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173669.1: Suppressed sequence

    Description
    NM_173669.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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