Format

Send to:

Choose Destination

C5orf64 chromosome 5 open reading frame 64 [ Homo sapiens (human) ]

Gene ID: 285668, updated on 12-Oct-2019

Summary

Official Symbol
C5orf64provided by HGNC
Official Full Name
chromosome 5 open reading frame 64provided by HGNC
Primary source
HGNC:HGNC:26744
See related
Ensembl:ENSG00000178722
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See C5orf64 in Genome Data Viewer
Location:
5q12.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (61637760..61730997)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (60933636..61002362)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene zinc finger SWIM-type containing 6 Neighboring gene ribosomal protein L3 pseudogene 6 Neighboring gene basic proline-rich protein Neighboring gene uncharacterized LOC101928651 Neighboring gene RNA, U6 small nuclear 913, pseudogene Neighboring gene heat shock protein family D (Hsp60) member 1 pseudogene 22 Neighboring gene C5orf64 antisense RNA 1 Neighboring gene uncharacterized LOC105378995

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • uncharacterized protein C5orf64

Clone Names

  • FLJ37543, FLJ45901, MGC138187, MGC138213

Gene Ontology Provided by GOA

Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126523.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
    Source sequence(s)
    AC094086, AK094862, DA152848, DB166929
  2. NR_126524.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an alternate internal exon and contains alternate 3' exon structure, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    DA364196, DA388090, DB309601, DB463100
  3. NR_126525.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) shares the 5' terminal exon but lacks the remaining exons, and instead contains an alternate 3' terminal exon, compared to variant 1. This variant is represented as non-coding because it lacks the entire ORF found in variant 1.
    Source sequence(s)
    DA364196, DA388090, DB309601
  4. NR_161251.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026746, AC094086
    Related
    ENST00000505642.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    61637760..61730997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Support Center