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AGA-DT AGA divergent transcript [ Homo sapiens (human) ]

Gene ID: 285500, updated on 31-Jan-2023

Summary

Official Symbol
AGA-DTprovided by HGNC
Official Full Name
AGA divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:27730
See related
AllianceGenome:HGNC:27730
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See AGA-DT in Genome Data Viewer
Location:
4q34.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (177442146..177681435)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (180781169..181014649)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377558 Neighboring gene Sharpr-MPRA regulatory region 1660 Neighboring gene nei like DNA glycosylase 3 Neighboring gene Sharpr-MPRA regulatory region 1546 Neighboring gene RNA, 5S ribosomal pseudogene 172 Neighboring gene aspartylglucosaminidase Neighboring gene U7 small nuclear RNA Neighboring gene uncharacterized LOC105377559 Neighboring gene uncharacterized LOC105377560 Neighboring gene long intergenic non-protein coding RNA 1098

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183777.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  2. NR_183778.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  3. NR_183779.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  4. NR_183780.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  5. NR_183781.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879
  6. NR_183782.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  7. NR_183783.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879
  8. NR_183784.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  9. NR_183785.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  10. NR_183786.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  11. NR_183787.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  12. NR_183788.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  13. NR_183789.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC103879, AC106880
  14. NR_183790.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881, AC106880
  15. NR_183791.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  16. NR_183792.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  17. NR_183793.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  18. NR_183794.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  19. NR_183795.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  20. NR_183796.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  21. NR_183797.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  22. NR_183798.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  23. NR_183799.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  24. NR_183800.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881
  25. NR_183801.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC078881

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    177442146..177681435
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007058389.1 RNA Sequence

  2. XR_001741929.2 RNA Sequence

  3. XR_007058386.1 RNA Sequence

  4. XR_007058388.1 RNA Sequence

  5. XR_007058390.1 RNA Sequence

  6. XR_007058385.1 RNA Sequence

  7. XR_007058387.1 RNA Sequence

  8. XR_001741928.2 RNA Sequence

  9. XR_939507.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    180781169..181014649
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007075182.1 RNA Sequence

  2. XR_007075184.1 RNA Sequence

  3. XR_007075186.1 RNA Sequence

  4. XR_007075183.1 RNA Sequence

  5. XR_007075185.1 RNA Sequence

  6. XR_007075180.1 RNA Sequence

  7. XR_007075181.1 RNA Sequence

  8. XR_007075179.1 RNA Sequence