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LINC00955 long intergenic non-protein coding RNA 955 [ Homo sapiens (human) ]

Gene ID: 285492, updated on 17-Sep-2024

Summary

Official Symbol
LINC00955provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 955provided by HGNC
Primary source
HGNC:HGNC:26644
See related
AllianceGenome:HGNC:26644
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in duodenum (RPKM 2.8), small intestine (RPKM 2.0) and 1 other tissue See more
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Genomic context

See LINC00955 in Genome Data Viewer
Location:
4p16.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (3576869..3590985)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (3575872..3589986)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (3578596..3592712)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:3510576-3511775 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:3516456-3517655 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3517921-3518540 Neighboring gene LDL receptor related protein associated protein 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3528991-3529881 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3529882-3530771 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21225 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15208 Neighboring gene uncharacterized LOC124900650 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3565549-3566194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3566195-3566840 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3566841-3567484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:3588685-3589343 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3589864-3590364 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3597341-3597842 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3598892-3599392 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3599393-3599893 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3601169-3601670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3601671-3602170 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3602861-3603362 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3615589-3616204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3632899-3633898 Neighboring gene uncharacterized LOC112268461 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:3642537-3642720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:3644777-3645308 Neighboring gene uncharacterized LOC105374357

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040045.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK092743, AL121796, AX747702, BC131584

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    3576869..3590985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    3575872..3589986
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173661.1: Suppressed sequence

    Description
    NM_173661.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.