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LINC01091 long intergenic non-protein coding RNA 1091 [ Homo sapiens (human) ]

Gene ID: 285419, updated on 13-May-2022

Summary

Official Symbol
LINC01091provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1091provided by HGNC
Primary source
HGNC:HGNC:27721
See related
Ensembl:ENSG00000249464 AllianceGenome:HGNC:27721
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01091 in Genome Data Viewer
Location:
4q28.1
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (123649991..123930778)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (126953999..127234781)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (124571146..124851933)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377405 Neighboring gene Sharpr-MPRA regulatory region 12612 Neighboring gene uncharacterized LOC124900775 Neighboring gene ribosomal protein L21 pseudogene 50 Neighboring gene Sharpr-MPRA regulatory region 6240 Neighboring gene VISTA enhancer hs1525 Neighboring gene uncharacterized LOC124900776 Neighboring gene uncharacterized LOC105377407 Neighboring gene peptidylprolyl isomerase A pseudogene 76

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027105.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC096732, AC108075, AI051428, AW771701, BM311133, BX108574
    Related
    ENST00000508111.6
  2. NR_027106.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC093767, BC033378
    Related
    ENST00000515769.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    123649991..123930778
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    126953999..127234781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)