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C3orf56 chromosome 3 open reading frame 56 [ Homo sapiens (human) ]

Gene ID: 285311, updated on 11-Jun-2021

Summary

Official Symbol
C3orf56provided by HGNC
Official Full Name
chromosome 3 open reading frame 56provided by HGNC
Primary source
HGNC:HGNC:32481
See related
Ensembl:ENSG00000214324
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See C3orf56 in Genome Data Viewer
Location:
3q21.3
Exon count:
2
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 3 NC_000003.12 (127193131..127198185)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (126911974..126917028)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 6 Neighboring gene regulator of chromosome condensation 2 pseudogene 4 Neighboring gene Sharpr-MPRA regulatory region 421 Neighboring gene plexin A1 Neighboring gene putative uncharacterized protein C3orf56 Neighboring gene RNA, U6 small nuclear 1047, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
GeneReviews: Not available
Genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
putative uncharacterized protein C3orf56

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007534.2NP_001007535.1  putative uncharacterized protein C3orf56

    See identical proteins and their annotated locations for NP_001007535.1

    Status: VALIDATED

    Source sequence(s)
    AC112482
    UniProtKB/Swiss-Prot
    Q8N813
    Related
    ENSP00000493276.1, ENST00000624688.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p13 Primary Assembly

    Range
    127193131..127198185
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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