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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001080448.3 → NP_001073917.2 ephrin type-A receptor 6 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AC107482, AC110491, AC117439, AC117470, AC119745, AC130510, AC135369, BM676895, DA385338
- Consensus CDS
-
CCDS46876.1
- UniProtKB/Swiss-Prot
- D6RAL5, Q9UF33
- UniProtKB/TrEMBL
-
A0A0B4J1T8
- Related
- ENSP00000374323.5, ENST00000389672.10
- Conserved Domains (8) summary
-
- cd09547
Location:1055 → 1118
- SAM_EPH-A6; SAM domain of EPH-A6 subfamily of tyrosine kinase receptors
- smart00454
Location:1052 → 1119
- SAM; Sterile alpha motif
- cd10484
Location:128 → 300
- EphR_LBD_A6; Ligand Binding Domain of Ephrin type-A Receptor 6
- cd00063
Location:537 → 628
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd05066
Location:720 → 1028
- PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
- pfam00041
Location:427 → 521
- fn3; Fibronectin type III domain
- pfam07714
Location:725 → 1024
- Pkinase_Tyr; Protein tyrosine kinase
- pfam14575
Location:648 → 720
- EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
-
NM_001278300.2 → NP_001265229.1 ephrin type-A receptor 6 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) contains multiple differences at the 5' and 3' ends, compared to variant 1. It represents use of an alternate promoter and initiates translation at an alternate start codon. The encoded isoform (c) is shorter and has distinct N- and C- termini, compared to isoform a.
- Source sequence(s)
-
AC117439, AC117470, AL133666, BC067287, DC398430
- Consensus CDS
-
CCDS63697.1
- UniProtKB/Swiss-Prot
-
Q9UF33
- Related
- ENSP00000421711.1, ENST00000514100.5
- Conserved Domains (3) summary
-
- pfam07714
Location:117 → 320
- Pkinase_Tyr; Protein tyrosine kinase
- pfam14575
Location:40 → 112
- EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
- cl21453
Location:112 → 320
- PKc_like; Protein Kinases, catalytic domain
-
NM_001278301.2 → NP_001265230.1 ephrin type-A receptor 6 isoform d
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks multiple 3' exons, and includes an alternate 3' exon, resulting in a distinct 3' coding region and 3' UTR, compared to variant 1. The encoded isoform (d) is shorter and has a distinct C-terminus, compared to isoform a.
- Source sequence(s)
-
AC119745, AY358738, DA385338
- UniProtKB/TrEMBL
-
H0Y9V0
- Related
- ENSP00000425132.1, ENST00000506569.1
- Conserved Domains (1) summary
-
- cd10484
Location:128 → 300
- EphR_LBD_A6; Ligand Binding Domain of Ephrin type-A Receptor 6
-
NM_173655.4 → NP_775926.1 ephrin type-A receptor 6 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) contains multiple differences at the 5' and 3' ends, compared to variant 1. It represents use of an alternate promoter and initiates translation at an alternate start codon. The encoded isoform (b) is shorter and has distinct N- and C- termini, compared to isoform a.
- Source sequence(s)
-
AL133666, DC398430
- Consensus CDS
-
CCDS54616.1
- UniProtKB/Swiss-Prot
-
Q9UF33
- Related
- ENSP00000423950.1, ENST00000502694.1
- Conserved Domains (3) summary
-
- pfam07714
Location:117 → 321
- Pkinase_Tyr; Protein tyrosine kinase
- pfam14575
Location:40 → 112
- EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
- cl21453
Location:112 → 320
- PKc_like; Protein Kinases, catalytic domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
96814594..97761532
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017006211.2 → XP_016861700.1 ephrin type-A receptor 6 isoform X4
- UniProtKB/Swiss-Prot
- D6RAL5, Q9UF33
- Conserved Domains (8) summary
-
- cd09547
Location:943 → 1006
- SAM_EPH-A6; SAM domain of EPH-A6 subfamily of tyrosine kinase receptors
- smart00454
Location:940 → 1007
- SAM; Sterile alpha motif
- cd00063
Location:409 → 516
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd05066
Location:608 → 916
- PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
- pfam00041
Location:299 → 393
- fn3; Fibronectin type III domain
- pfam07714
Location:613 → 912
- Pkinase_Tyr; Protein tyrosine kinase
- pfam14575
Location:536 → 608
- EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
- cl02704
Location:23 → 172
- EphR_LBD; Ligand Binding Domain of Ephrin Receptors
-
XM_006713592.4 → XP_006713655.1 ephrin type-A receptor 6 isoform X1
- UniProtKB/Swiss-Prot
- D6RAL5, Q9UF33
- Conserved Domains (8) summary
-
- cd09547
Location:1071 → 1134
- SAM_EPH-A6; SAM domain of EPH-A6 subfamily of tyrosine kinase receptors
- smart00454
Location:1068 → 1135
- SAM; Sterile alpha motif
- cd10484
Location:128 → 300
- EphR_LBD_A6; Ligand Binding Domain of Ephrin type-A Receptor 6
- cd00063
Location:537 → 644
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd05066
Location:736 → 1044
- PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
- pfam00041
Location:427 → 521
- fn3; Fibronectin type III domain
- pfam07714
Location:741 → 1040
- Pkinase_Tyr; Protein tyrosine kinase
- pfam14575
Location:664 → 736
- EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
-
XM_017006210.2 → XP_016861699.1 ephrin type-A receptor 6 isoform X2
- UniProtKB/Swiss-Prot
- D6RAL5, Q9UF33
-
XM_047448008.1 → XP_047303964.1 ephrin type-A receptor 6 isoform X3
-
XM_017006214.2 → XP_016861703.1 ephrin type-A receptor 6 isoform X7
-
XM_017006219.2 → XP_016861708.1 ephrin type-A receptor 6 isoform X11
- UniProtKB/TrEMBL
-
E7EU71
- Related
- ENSP00000420598.2, ENST00000470610.6
-
XM_011512705.3 → XP_011511007.1 ephrin type-A receptor 6 isoform X13
- Conserved Domains (1) summary
-
- cd10484
Location:128 → 300
- EphR_LBD_A6; Ligand Binding Domain of Ephrin type-A Receptor 6
-
XM_011512706.3 → XP_011511008.1 ephrin type-A receptor 6 isoform X14
- UniProtKB/TrEMBL
-
H0Y9V0
- Conserved Domains (1) summary
-
- cd10484
Location:128 → 300
- EphR_LBD_A6; Ligand Binding Domain of Ephrin type-A Receptor 6
-
XM_011512707.3 → XP_011511009.1 ephrin type-A receptor 6 isoform X15
- UniProtKB/TrEMBL
-
H0Y9V0
- Conserved Domains (1) summary
-
- cd10484
Location:128 → 300
- EphR_LBD_A6; Ligand Binding Domain of Ephrin type-A Receptor 6
-
XM_017006212.1 → XP_016861701.1 ephrin type-A receptor 6 isoform X5
- UniProtKB/Swiss-Prot
- D6RAL5, Q9UF33
-
XM_017006213.2 → XP_016861702.1 ephrin type-A receptor 6 isoform X6
- UniProtKB/Swiss-Prot
- D6RAL5, Q9UF33
- Conserved Domains (8) summary
-
- cd09547
Location:915 → 978
- SAM_EPH-A6; SAM domain of EPH-A6 subfamily of tyrosine kinase receptors
- smart00454
Location:912 → 979
- SAM; Sterile alpha motif
- cd00063
Location:381 → 488
- FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
- cd05066
Location:580 → 888
- PTKc_EphR_A; Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors
- pfam00041
Location:271 → 365
- fn3; Fibronectin type III domain
- pfam07714
Location:585 → 884
- Pkinase_Tyr; Protein tyrosine kinase
- pfam14575
Location:508 → 580
- EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
- cl02704
Location:1 → 144
- EphR_LBD; Ligand Binding Domain of Ephrin Receptors
-
XM_017006218.1 → XP_016861707.1 ephrin type-A receptor 6 isoform X10
-
XM_017006217.2 → XP_016861706.1 ephrin type-A receptor 6 isoform X9
-
XM_017006215.2 → XP_016861704.2 ephrin type-A receptor 6 isoform X8
-
XM_017006216.2 → XP_016861705.2 ephrin type-A receptor 6 isoform X8
-
XM_047448009.1 → XP_047303965.1 ephrin type-A receptor 6 isoform X12
RNA
-
XR_001740110.2 RNA Sequence
-
XR_924126.3 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
99518416..100468755
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054346273.1 → XP_054202248.1 ephrin type-A receptor 6 isoform X4
-
XM_054346270.1 → XP_054202245.1 ephrin type-A receptor 6 isoform X1
-
XM_054346271.1 → XP_054202246.1 ephrin type-A receptor 6 isoform X2
-
XM_054346272.1 → XP_054202247.1 ephrin type-A receptor 6 isoform X3
-
XM_054346276.1 → XP_054202251.1 ephrin type-A receptor 6 isoform X7
-
XM_054346281.1 → XP_054202256.1 ephrin type-A receptor 6 isoform X11
-
XM_054346283.1 → XP_054202258.1 ephrin type-A receptor 6 isoform X13
-
XM_054346284.1 → XP_054202259.1 ephrin type-A receptor 6 isoform X14
-
XM_054346285.1 → XP_054202260.1 ephrin type-A receptor 6 isoform X15
-
XM_054346274.1 → XP_054202249.1 ephrin type-A receptor 6 isoform X5
-
XM_054346275.1 → XP_054202250.1 ephrin type-A receptor 6 isoform X6
-
XM_054346280.1 → XP_054202255.1 ephrin type-A receptor 6 isoform X10
-
XM_054346279.1 → XP_054202254.1 ephrin type-A receptor 6 isoform X9
-
XM_054346277.1 → XP_054202252.1 ephrin type-A receptor 6 isoform X8
-
XM_054346278.1 → XP_054202253.1 ephrin type-A receptor 6 isoform X8
-
XM_054346282.1 → XP_054202257.1 ephrin type-A receptor 6 isoform X12
RNA
-
XR_008486700.1 RNA Sequence
-
XR_008486701.1 RNA Sequence