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RTP5 receptor transporter protein 5 (putative) [ Homo sapiens (human) ]

Gene ID: 285093, updated on 5-Jan-2022

Summary

Official Symbol
RTP5provided by HGNC
Official Full Name
receptor transporter protein 5 (putative)provided by HGNC
Primary source
HGNC:HGNC:26585
See related
Ensembl:ENSG00000188011
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXXC11; C2orf85; Z3CXXC5
Summary
Predicted to enable olfactory receptor binding activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of bitter taste; protein insertion into membrane; and protein targeting to membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Nov 2021]
Expression
Biased expression in brain (RPKM 2.7), lymph node (RPKM 0.5) and 3 other tissues See more
Orthologs
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Genomic context

See RTP5 in Genome Data Viewer
Location:
2q37.3
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (241869729..241873823)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (242811881..242815975)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 12914 Neighboring gene uncharacterized LOC105373977 Neighboring gene programmed cell death 1 Neighboring gene uncharacterized LOC105373978 Neighboring gene long intergenic non-protein coding RNA 1237 Neighboring gene family with sequence similarity 240 member C

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ33590, MGC142077, MGC142079

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables olfactory receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in detection of chemical stimulus involved in sensory perception of bitter taste IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein insertion into membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
receptor-transporting protein 5
Names
3CxxC-type zinc finger protein 5
CXXC finger protein 11
CXXC-type zinc finger protein 11
receptor (chemosensory) transporter protein 5 (putative)
zinc finger, 3CxxC-type 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173821.3NP_776182.2  receptor-transporting protein 5

    See identical proteins and their annotated locations for NP_776182.2

    Status: VALIDATED

    Source sequence(s)
    AC131097, BC113517
    Consensus CDS
    CCDS42843.1
    UniProtKB/Swiss-Prot
    Q14D33
    Related
    ENSP00000345374.3, ENST00000343216.3
    Conserved Domains (1) summary
    pfam13695
    Location:53150
    zf-3CxxC; Zinc-binding domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    241869729..241873823
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011510997.2XP_011509299.1  receptor-transporting protein 5 isoform X2

    See identical proteins and their annotated locations for XP_011509299.1

    Conserved Domains (1) summary
    pfam13695
    Location:53150
    zf-3CxxC; Zinc-binding domain
  2. XM_011510995.2XP_011509297.1  receptor-transporting protein 5 isoform X1

    See identical proteins and their annotated locations for XP_011509297.1

    Conserved Domains (1) summary
    pfam13695
    Location:32129
    zf-3CxxC; Zinc-binding domain

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187527.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    81827..85921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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