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LINC01114 long intergenic non-protein coding RNA 1114 [ Homo sapiens (human) ]

Gene ID: 284998, updated on 13-May-2022

Summary

Official Symbol
LINC01114provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1114provided by HGNC
Primary source
HGNC:HGNC:49245
See related
Ensembl:ENSG00000234177 AllianceGenome:HGNC:49245
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PANCAT
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01114 in Genome Data Viewer
Location:
2q12.1
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (104746637..104757719, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (105206473..105217548, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (105363095..105374177, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs969 Neighboring gene uncharacterized LOC101927383 Neighboring gene small nucleolar RNA SNORA72 Neighboring gene high mobility group box 3 pseudogene 11 Neighboring gene POU3F3 adjacent non-coding transcript 1 Neighboring gene VISTA enhancer hs1553

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • pancreatic cancer associated transcript

Clone Names

  • FLJ39302, AC068057.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038231.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC068057, AK096621, CA415523
    Related
    ENST00000425879.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    104746637..104757719 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    105206473..105217548 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)