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RNF149 ring finger protein 149 [ Homo sapiens (human) ]

Gene ID: 284996, updated on 2-Oct-2018

Summary

Official Symbol
RNF149provided by HGNC
Official Full Name
ring finger protein 149provided by HGNC
Primary source
HGNC:HGNC:23137
See related
Ensembl:ENSG00000163162 Vega:OTTHUMG00000130685
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
DNAPTP2
Expression
Ubiquitous expression in bone marrow (RPKM 14.1), appendix (RPKM 12.5) and 25 other tissues See more
Orthologs

Genomic context

See RNF149 in Genome Data Viewer
Location:
2q11.2
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 2 NC_000002.12 (101271213..101308716, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (101887681..101925178, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene TBC1 domain family member 8 Neighboring gene TBC1 domain family member 8 antisense RNA 1 Neighboring gene uncharacterized LOC105373511 Neighboring gene CCR4-NOT transcription complex subunit 11 Neighboring gene small nucleolar RNA, C/D box 89 Neighboring gene uncharacterized LOC105373512 Neighboring gene microRNA 5696 Neighboring gene succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial pseudogene Neighboring gene cellular repressor of E1A stimulated genes 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ90504

Gene Ontology Provided by GOA

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cellular response to drug IEA
Inferred from Electronic Annotation
more info
 
negative regulation of MAPK cascade IEA
Inferred from Electronic Annotation
more info
 
protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 
regulation of protein stability IEA
Inferred from Electronic Annotation
more info
 
ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane HDA PubMed 

General protein information

Preferred Names
E3 ubiquitin-protein ligase RNF149
Names
DNA polymerase-transactivated protein 2
RING-type E3 ubiquitin transferase RNF149
NP_775918.2
XP_005263977.1
XP_005263978.1
XP_011509292.1
XP_024308579.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173647.3NP_775918.2  E3 ubiquitin-protein ligase RNF149 precursor

    See identical proteins and their annotated locations for NP_775918.2

    Status: VALIDATED

    Source sequence(s)
    AC013722, AC073643, DA383672
    Consensus CDS
    CCDS2051.1
    UniProtKB/Swiss-Prot
    Q8NC42
    Related
    ENSP00000295317.3, OTTHUMP00000161272, ENST00000295317.3, OTTHUMT00000253180
    Conserved Domains (3) summary
    cd02122
    Location:43185
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    pfam13639
    Location:267310
    zf-RING_2; Ring finger domain
    cl11506
    Location:204235
    UPF0233; uncharacterized protein family (UPF0233)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p12 Primary Assembly

    Range
    101271213..101308716 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005263921.4XP_005263978.1  E3 ubiquitin-protein ligase RNF149 isoform X2

    Conserved Domains (3) summary
    cd02122
    Location:43185
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    pfam13639
    Location:267310
    zf-RING_2; Ring finger domain
    cl11506
    Location:204235
    UPF0233; uncharacterized protein family (UPF0233)
  2. XM_024452811.1XP_024308579.1  E3 ubiquitin-protein ligase RNF149 isoform X3

    Conserved Domains (2) summary
    cd02122
    Location:43185
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    cd16804
    Location:268315
    RING-H2_RNF149; RING finger, H2 subclass, found in RING finger protein 149 (RNF149) and similar proteins
  3. XM_005263920.3XP_005263977.1  E3 ubiquitin-protein ligase RNF149 isoform X1

    Conserved Domains (3) summary
    cd02122
    Location:43185
    PA_GRAIL_like; PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ...
    pfam13639
    Location:267310
    zf-RING_2; Ring finger domain
    cl11506
    Location:204235
    UPF0233; uncharacterized protein family (UPF0233)
  4. XM_011510990.2XP_011509292.1  E3 ubiquitin-protein ligase RNF149 isoform X4

    Conserved Domains (3) summary
    pfam13639
    Location:106149
    zf-RING_2; Ring finger domain
    cl10459
    Location:124
    Peptidases_S8_S53; Peptidase domain in the S8 and S53 families
    cl11506
    Location:4374
    UPF0233; uncharacterized protein family (UPF0233)

RNA

  1. XR_001738712.2 RNA Sequence

  2. XR_922908.2 RNA Sequence

    Related
    ENST00000424632.5, OTTHUMT00000329201
  3. XR_001738714.2 RNA Sequence

  4. XR_001738713.2 RNA Sequence

  5. XR_244888.4 RNA Sequence

  6. XR_922909.3 RNA Sequence

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