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TTC28-AS1 TTC28 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 284900, updated on 13-May-2022

Summary

Official Symbol
TTC28-AS1provided by HGNC
Official Full Name
TTC28 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:29336
See related
Ensembl:ENSG00000235954 AllianceGenome:HGNC:29336
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TTC28AS; TTC28-AS; dJ353E16.2
Expression
Ubiquitous expression in ovary (RPKM 2.4), endometrium (RPKM 2.3) and 25 other tissues See more
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Genomic context

See TTC28-AS1 in Genome Data Viewer
Location:
22q12.1
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (27919376..28002679)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (28380792..28464100)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 22 NC_000022.10 (28315364..28398667)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene VISTA enhancer hs1271 Neighboring gene phosphatidylinositol transfer protein beta Neighboring gene microRNA 3199-1 Neighboring gene microRNA 3199-2 Neighboring gene tetratricopeptide repeat domain 28 Neighboring gene RNA, 7SL, cytoplasmic 757, pseudogene Neighboring gene small nucleolar RNA SNORD42

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association study on obesity and obesity-related traits.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • TTC28 antisense RNA (non-protein coding)
  • TTC28 antisense RNA 1 (non-protein coding)

Clone Names

  • KIAA1648

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_026962.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses the same first exon as variant 1 but has a distinct 3' splice pattern.
    Source sequence(s)
    BC016779, BQ018666, DA934139
    Related
    ENST00000437713.7
  2. NR_026963.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AL033538, AL832597, BU740789, DA934139, DB254752
    Related
    ENST00000454741.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    27919376..28002679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    28380792..28464100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)