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LINC00319 long intergenic non-protein coding RNA 319 [ Homo sapiens (human) ]

Gene ID: 284836, updated on 1-Jun-2020

Summary

Official Symbol
LINC00319provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 319provided by HGNC
Primary source
HGNC:HGNC:19730
See related
Ensembl:ENSG00000188660
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRED49; C21orf125; NCRNA00319
Expression
Low expression observed in reference dataset See more

Genomic context

See LINC00319 in Genome Data Viewer
Location:
21q22.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (43446601..43453902)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (44869904..44873773)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987302 Neighboring gene SIK1-LINC00319 intergenic CAGE-defined high expression enhancer Neighboring gene salt inducible kinase 1 Neighboring gene uncharacterized LOC102723380 Neighboring gene long intergenic non-protein coding RNA 313 Neighboring gene heat shock transcription factor 2 binding protein Neighboring gene Sharpr-MPRA regulatory region 13752

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_152722.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AP001047
    Related
    ENST00000448049.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    43446601..43453902
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_194309.1: Suppressed sequence

    Description
    NM_194309.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
  2. NR_026960.1: Suppressed sequence

    Description
    NR_026960.1: This RefSeq has been removed because currently there is insufficient support for this splice structure.
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