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LINC01697 long intergenic non-protein coding RNA 1697 [ Homo sapiens (human) ]

Gene ID: 284825, updated on 25-Jan-2022

Summary

Official Symbol
LINC01697provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1697provided by HGNC
Primary source
HGNC:HGNC:52485
See related
Ensembl:ENSG00000232079 AllianceGenome:HGNC:52485
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in fat (RPKM 3.3), kidney (RPKM 2.1) and 5 other tissues See more
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Genomic context

See LINC01697 in Genome Data Viewer
Location:
21q21.3
Exon count:
7
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 21 NC_000021.9 (28048414..28137609)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (29420733..29509928)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 113 Neighboring gene long intergenic non-protein coding RNA 314 Neighboring gene long intergenic non-protein coding RNA 1695 Neighboring gene uncharacterized LOC102724420 Neighboring gene uncharacterized LOC105372764

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_126010.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK093119, AL035610
    Related
    ENST00000426534.2
  2. NR_126011.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in both the 5' and 3' exon structures, resulting in a shorter transcript than variant 1.
    Source sequence(s)
    AJ006995, CD515480
    Related
    ENST00000436878.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p13 Primary Assembly

    Range
    28048414..28137609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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