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FRG1BP FSHD region gene 1 family member B, pseudogene [ Homo sapiens (human) ]

Gene ID: 284802, updated on 13-May-2022

Summary

Official Symbol
FRG1BPprovided by HGNC
Official Full Name
FSHD region gene 1 family member B, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:15792
See related
AllianceGenome:HGNC:15792
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FRG1B; C20orf80; bA348I14.2
Expression
Ubiquitous expression in thyroid (RPKM 14.6), brain (RPKM 13.9) and 25 other tissues See more
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Genomic context

See FRG1BP in Genome Data Viewer
Location:
20q11.1-q11.21
Exon count:
9
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (30377164..30419843)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (30373658..30416456, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (29611840..29653908)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904969 Neighboring gene family with sequence similarity 242 member A Neighboring gene MLLT10 pseudogene 1 Neighboring gene RNA, 5.8S ribosomal pseudogene Neighboring gene serine/arginine repetitive matrix protein 1-like Neighboring gene RNA, 18S ribosomal pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003579.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 3' terminal exon resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    BC062724, BU675133, DA215301
  2. NR_145491.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    ABBA01015426, AL441988, AW189365, BC095491, DA215301

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    30377164..30419843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    30373658..30416456 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207350.1: Suppressed sequence

    Description
    NM_207350.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.