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hdfR [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 2847698, updated on 24-Aug-2024

Summary

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Official Symbol
hdfR
Primary source
ECOCYC:EG11449
Locus tag
b4480
See related
ASAP:ABE-0174109
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
b3762; b3763; ECK3756; yifA; yifD
Summary
LysR family. [More information is available at EcoGene: EG11449]. "Hns-dependent flhDCregulator," HdfR, negatively regulates the expression of the flagellar master operon, flhDC . [More information is available at EcoCyc: EG11449].
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Genomic context

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Sequence:
NC_000913.3 (3947128..3947967, complement)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene tRNA-Asp Neighboring gene tRNA-Trp Neighboring gene macrodomain Ori protein Neighboring gene putative magnesium chelatase YifB

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. H-NS-Dependent regulation of flagellar synthesis is mediated by a LysR family protein. Ko M, et al. J Bacteriol, 2000 Aug. PMID 10913108, Free PMC Article
  2. Sequence and transcriptional activity of the Escherichia coli K-12 chromosome region between rrnC and ilvGMEDA. Coppola G, et al. Gene, 1991 Jan 2. PMID 1995430
  3. Analysis of the Escherichia coli genome: DNA sequence of the region from 84.5 to 86.5 minutes. Daniels DL, et al. Science, 1992 Aug 7. PMID 1379743
  4. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
  5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by EcoCyc

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within negative regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
DNA-binding transcriptional dual regulator HdfR

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3947128..3947967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_026246.1 DNA-binding transcriptional dual regulator HdfR [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for YP_026246.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A376MGN5
    Conserved Domains (1) summary
    PRK03601
    Location:1 → 277
    PRK03601; HTH-type transcriptional regulator HdfR
Nucleotide Protein
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