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LINC01270 long intergenic non-protein coding RNA 1270 [ Homo sapiens (human) ]

Gene ID: 284751, updated on 13-May-2022

Summary

Official Symbol
LINC01270provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1270provided by HGNC
Primary source
HGNC:HGNC:27658
See related
Ensembl:ENSG00000203999 AllianceGenome:HGNC:27658
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in liver (RPKM 1.2), appendix (RPKM 1.0) and 21 other tissues See more
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Genomic context

See LINC01270 in Genome Data Viewer
Location:
20q13.13
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (50292720..50314919)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (52062422..52084536)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (48909257..48931456)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372656 Neighboring gene plaque enriched lncRNA in atherosclerotic and inflammatory bowel macrophage regulation Neighboring gene Sharpr-MPRA regulatory region 10045 Neighboring gene long intergenic non-protein coding RNA 1271 Neighboring gene uncharacterized LOC105372657 Neighboring gene uncharacterized LOC124904928

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034124.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK090605, AL354889
    Related
    ENST00000371639.8

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    50292720..50314919
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    52062422..52084536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001025463.1: Suppressed sequence

    Description
    NM_001025463.1: This RefSeq was permanently suppressed because it contains repetitive sequence, is a nonsense-mediated mRNA decay (NMD) candidate and currently there is insufficient support for the protein.