U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SNHG28 small nucleolar RNA host gene 28 [ Homo sapiens (human) ]

Gene ID: 284677, updated on 13-May-2022

Summary

Official Symbol
SNHG28provided by HGNC
Official Full Name
small nucleolar RNA host gene 28provided by HGNC
Primary source
HGNC:HGNC:27647
See related
Ensembl:ENSG00000188004 AllianceGenome:HGNC:27647
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf204; VSIG8-OT1
Summary
Enables RNA binding activity. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in appendix (RPKM 8.6), lymph node (RPKM 7.4) and 23 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SNHG28 in Genome Data Viewer
Location:
1q23.2
Exon count:
5
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (159834478..159855037, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (158971473..158992042, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (159804268..159824827, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 9392 Neighboring gene uncharacterized LOC105371464 Neighboring gene Fc receptor like 6 Neighboring gene SLAM family member 8 Neighboring gene small nucleolar RNA SNORD64 Neighboring gene uncharacterized LOC107985216 Neighboring gene V-set and immunoglobulin domain containing 8 Neighboring gene Sharpr-MPRA regulatory region 5062 Neighboring gene cilia and flagella associated protein 45 Neighboring gene uncharacterized LOC124904434

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • VSIG8 overlapping transcript 1

Clone Names

  • FLJ20442, FLJ39187

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147122.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080176, AL590560, DA364631
    Related
    ENST00000676197.1
  2. NR_147123.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080176, AL590560, DA288133
  3. NR_147124.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080176, AL590560, BI753917
    Related
    ENST00000491974.2
  4. NR_147125.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL080176, AL537381, AL590560
    Related
    ENST00000674760.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    159834478..159855037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    158971473..158992042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001134233.1: Suppressed sequence

    Description
    NM_001134233.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.