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GARIN5B golgi associated RAB2 interactor family member 5B [ Homo sapiens (human) ]

Gene ID: 284418, updated on 29-Oct-2022

Summary

Official Symbol
GARIN5Bprovided by HGNC
Official Full Name
golgi associated RAB2 interactor family member 5Bprovided by HGNC
Primary source
HGNC:HGNC:25278
See related
Ensembl:ENSG00000180043 AllianceGenome:HGNC:25278
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM71E2; C19orf16
Expression
Restricted expression toward testis (RPKM 16.6) See more
Orthologs
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Genomic context

See GARIN5B in Genome Data Viewer
Location:
19q13.42
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (55354908..55363260, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (58450414..58458745, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (55866276..55874628, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene lysine methyltransferase 5C Neighboring gene cytochrome c oxidase subunit 6B2 Neighboring gene interleukin 11 Neighboring gene CRISPRi-validated cis-regulatory element chr19.6204

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Potential readthrough

Included gene: COX6B2

Homology

Clone Names

  • MGC35045, DKFZp434G1729

General protein information

Preferred Names
Golgi-associated RAB2 interactor protein 5B
Names
Golgi associated RAB2 interactor protein 5B
family with sequence similarity 71 member E2
protein FAM71E2
putative protein FAM71E2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145402.2NP_001138874.1  Golgi-associated RAB2 interactor protein 5B

    See identical proteins and their annotated locations for NP_001138874.1

    Status: VALIDATED

    Source sequence(s)
    AC020922, AK127979, AL834316, BC031875, KF573705
    UniProtKB/Swiss-Prot
    Q8N5Q1, Q8ND99
    Related
    ENSP00000398617.1, ENST00000424985.3
    Conserved Domains (3) summary
    PHA03247
    Location:363616
    PHA03247; large tegument protein UL36; Provisional
    PRK14951
    Location:423546
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    pfam12480
    Location:98159
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    55354908..55363260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    58450414..58458745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)