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GARIN5B golgi associated RAB2 interactor family member 5B [ Homo sapiens (human) ]

Gene ID: 284418, updated on 26-Nov-2021

Summary

Official Symbol
GARIN5Bprovided by HGNC
Official Full Name
golgi associated RAB2 interactor family member 5Bprovided by HGNC
Primary source
HGNC:HGNC:25278
See related
Ensembl:ENSG00000180043
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM71E2; C19orf16
Expression
Restricted expression toward testis (RPKM 16.6) See more
Orthologs
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Genomic context

See GARIN5B in Genome Data Viewer
Location:
19q13.42
Exon count:
11
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (55354908..55363260, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (55866276..55874628, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene lysine methyltransferase 5C Neighboring gene cytochrome c oxidase subunit 6B2 Neighboring gene interleukin 11 Neighboring gene CRISPRi-validated cis-regulatory element chr19.6204

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Potential readthrough

Included gene: COX6B2

Homology

Clone Names

  • MGC35045, DKFZp434G1729

General protein information

Preferred Names
protein FAM71E2
Names
family with sequence similarity 71 member E2
putative protein FAM71E2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145402.2NP_001138874.1  protein FAM71E2

    See identical proteins and their annotated locations for NP_001138874.1

    Status: VALIDATED

    Source sequence(s)
    AC020922, AK127979, AL834316, BC031875, KF573705
    UniProtKB/Swiss-Prot
    Q8N5Q1
    Related
    ENSP00000398617.1, ENST00000424985.3
    Conserved Domains (1) summary
    pfam12480
    Location:94159
    DUF3699; Protein of unknown function (DUF3699)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    55354908..55363260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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