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C19orf54 chromosome 19 open reading frame 54 [ Homo sapiens (human) ]

Gene ID: 284325, updated on 23-Nov-2021

Summary

Official Symbol
C19orf54provided by HGNC
Official Full Name
chromosome 19 open reading frame 54provided by HGNC
Primary source
HGNC:HGNC:24758
See related
Ensembl:ENSG00000188493
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in small intestine (RPKM 5.1), duodenum (RPKM 5.0) and 25 other tissues See more
Orthologs
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Genomic context

See C19orf54 in Genome Data Viewer
Location:
19q13.2
Exon count:
12
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (40740856..40751372, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (41246766..41256382, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene NUMB like endocytic adaptor protein Neighboring gene Sharpr-MPRA regulatory region 4590 Neighboring gene coenzyme Q8B Neighboring gene RNA, U6 small nuclear 195, pseudogene Neighboring gene inositol-trisphosphate 3-kinase C Neighboring gene small nuclear ribonucleoprotein polypeptide A Neighboring gene RAB4B-EGLN2 readthrough (NMD candidate) Neighboring gene MIA-RAB4B readthrough (NMD candidate) Neighboring gene RAB4B, member RAS oncogene family Neighboring gene MIA SH3 domain containing

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ17063, FLJ41131, MGC103014

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001353805.2NP_001340734.1  UPF0692 protein C19orf54 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC020945, BC090894, DC399549
  2. NM_001353806.2NP_001340735.1  UPF0692 protein C19orf54 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC020945
  3. NM_001353807.2NP_001340736.1  UPF0692 protein C19orf54 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC020945
  4. NM_001353808.2NP_001340737.1  UPF0692 protein C19orf54 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC020945
  5. NM_001353809.2NP_001340738.1  UPF0692 protein C19orf54 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC020945
  6. NM_198476.5NP_940878.3  UPF0692 protein C19orf54 isoform 1

    See identical proteins and their annotated locations for NP_940878.3

    Status: VALIDATED

    Source sequence(s)
    AC020945, AI250667, BC020262, DA073426
    Consensus CDS
    CCDS12564.2
    UniProtKB/Swiss-Prot
    Q5BKX5
    Related
    ENSP00000367564.2, ENST00000378313.7

RNA

  1. NR_148548.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI250667, AK123126
    Related
    ENST00000469741.6
  2. NR_148549.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020945
    Related
    ENST00000470681.5
  3. NR_148550.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020945
  4. NR_148551.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC020945

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    40740856..40751372 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011526774.3XP_011525076.1  UPF0692 protein C19orf54 isoform X1

    See identical proteins and their annotated locations for XP_011525076.1

  2. XM_011526785.3XP_011525087.1  UPF0692 protein C19orf54 isoform X11

  3. XM_011526784.3XP_011525086.1  UPF0692 protein C19orf54 isoform X8

  4. XM_017026623.2XP_016882112.1  UPF0692 protein C19orf54 isoform X10

  5. XM_011526783.3XP_011525085.1  UPF0692 protein C19orf54 isoform X7

  6. XM_017026622.2XP_016882111.1  UPF0692 protein C19orf54 isoform X9

  7. XM_011526778.3XP_011525080.1  UPF0692 protein C19orf54 isoform X3

  8. XM_017026620.2XP_016882109.1  UPF0692 protein C19orf54 isoform X2

  9. XM_011526776.3XP_011525078.1  UPF0692 protein C19orf54 isoform X2

  10. XM_005258776.5XP_005258833.1  UPF0692 protein C19orf54 isoform X5

    See identical proteins and their annotated locations for XP_005258833.1

  11. XM_011526779.3XP_011525081.1  UPF0692 protein C19orf54 isoform X4

  12. XM_011526775.2XP_011525077.1  UPF0692 protein C19orf54 isoform X1

    See identical proteins and their annotated locations for XP_011525077.1

  13. XM_006723153.3XP_006723216.1  UPF0692 protein C19orf54 isoform X5

    See identical proteins and their annotated locations for XP_006723216.1

  14. XM_011526782.3XP_011525084.1  UPF0692 protein C19orf54 isoform X6

  15. XM_017026625.2XP_016882114.1  UPF0692 protein C19orf54 isoform X13

  16. XM_011526786.3XP_011525088.1  UPF0692 protein C19orf54 isoform X12

  17. XM_006723152.3XP_006723215.1  UPF0692 protein C19orf54 isoform X5

    See identical proteins and their annotated locations for XP_006723215.1

RNA

  1. XR_001753666.2 RNA Sequence

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