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LINC00670 long intergenic non-protein coding RNA 670 [ Homo sapiens (human) ]

Gene ID: 284034, updated on 19-Jul-2022

Summary

Official Symbol
LINC00670provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 670provided by HGNC
Primary source
HGNC:HGNC:44338
See related
Ensembl:ENSG00000179136 AllianceGenome:HGNC:44338
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CARDINAL
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC00670 in Genome Data Viewer
Location:
17p12
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (12549968..12637187)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (12457500..12544702)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (12453285..12540504)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase kinase 4 Neighboring gene dynein light chain Tctex-type 1 pseudogene Neighboring gene microRNA 744 Neighboring gene uncharacterized LOC105371540 Neighboring gene MYOCD antisense RNA 1 Neighboring gene ARHGAP44 and MYOCD antisense RNA 1 Neighboring gene myocardin Neighboring gene Rho GTPase activating protein 44

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • cardiac lncRNA transcribed adjacent to myocardin

Clone Names

  • FLJ34690

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034144.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon and is shorter, compared to variant 1.
    Source sequence(s)
    AC005358, BC122870, DB255288
  2. NR_034145.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AC005358, AK092009, DB255288
    Related
    ENST00000313495.7

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    12549968..12637187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    12457500..12544702
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_182567.1: Suppressed sequence

    Description
    NM_182567.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.