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UBALD2 UBA like domain containing 2 [ Homo sapiens (human) ]

Gene ID: 283991, updated on 13-Mar-2020

Summary

Official Symbol
UBALD2provided by HGNC
Official Full Name
UBA like domain containing 2provided by HGNC
Primary source
HGNC:HGNC:28438
See related
Ensembl:ENSG00000185262
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM100B
Expression
Ubiquitous expression in bone marrow (RPKM 45.5), small intestine (RPKM 20.8) and 25 other tissues See more
Orthologs

Genomic context

See UBALD2 in Genome Data Viewer
Location:
17q25.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 17 NC_000017.11 (76265348..76271298)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (74261286..74267379)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371896 Neighboring gene uncharacterized LOC107985019 Neighboring gene glutamine rich 2 Neighboring gene phosphoribosyl pyrophosphate synthetase associated protein 1 Neighboring gene RNA, U6 small nuclear 24, pseudogene Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 43

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of family with sequence similarity 100, member B (FAM100B) by siRNA regulates on HIV-1 life cycle in HeLa P4/R5 cells, suggesting a regulatory role in HIV replication PubMed

Go to the HIV-1, Human Interaction Database

General gene information

Markers

Homology

Clone Names

  • MGC29814, MGC71792

General protein information

Preferred Names
UBA-like domain-containing protein 2
Names
family with sequence similarity 100, member B
protein FAM100B

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_182565.4NP_872371.1  UBA-like domain-containing protein 2

    See identical proteins and their annotated locations for NP_872371.1

    Status: VALIDATED

    Source sequence(s)
    AC015801, BC060859, BU167469, CT004974
    Consensus CDS
    CCDS11742.1
    UniProtKB/Swiss-Prot
    Q8IYN6
    Related
    ENSP00000331298.6, ENST00000327490.8
    Conserved Domains (1) summary
    cd14343
    Location:1048
    UBA_F100B_like; UBA-like domain found in protein FAM100B

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p13 Primary Assembly

    Range
    76265348..76271298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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