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LINC01566 long intergenic non-protein coding RNA 1566 [ Homo sapiens (human) ]

Gene ID: 283914, updated on 17-Sep-2024

Summary

Official Symbol
LINC01566provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1566provided by HGNC
Primary source
HGNC:HGNC:27555
See related
Ensembl:ENSG00000259841 AllianceGenome:HGNC:27555
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01566 in Genome Data Viewer
Location:
16p11.1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (35363416..35391713)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (38737216..38765514, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (34597787..34626084)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene angiogenic factor with G-patch and FHA domains 1 pseudogene 9 Neighboring gene chromosome 2 open reading frame 69 pseudogene 4 Neighboring gene FSHD region gene 2 family member G, pseudogene Neighboring gene angiogenic factor with G-patch and FHA domains 1 pseudogene 4 Neighboring gene uncharacterized LOC105371201 Neighboring gene FSHD region gene 2 family member I, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027079.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    BC045579
    Related
    ENST00000569242.1
  2. NR_027080.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains multiple differences at both ends and in the internal exons, resulting in a shorter transcript, compared to variant 1.
    Source sequence(s)
    AC007353, BC038774

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    35363416..35391713
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    38737216..38765514 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)