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HCCAT5 hepatocellular carcinoma associated transcript 5 [ Homo sapiens (human) ]

Gene ID: 283902, updated on 13-May-2022

Summary

Official Symbol
HCCAT5provided by HGNC
Official Full Name
hepatocellular carcinoma associated transcript 5provided by HGNC
Primary source
HGNC:HGNC:48612
See related
Ensembl:ENSG00000260880 MIM:615613; AllianceGenome:HGNC:48612
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HTA; FJ222407
Expression
Low expression observed in reference dataset See more
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Genomic context

See HCCAT5 in Genome Data Viewer
Location:
16q22.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (73092349..73093774)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (78910078..78911503)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (73126248..73127673)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene zinc finger homeobox 3 Neighboring gene VISTA enhancer hs16 Neighboring gene uncharacterized LOC124903719 Neighboring gene HCCAT5-C16orf47 intergenic CAGE-defined high expression enhancer Neighboring gene uncharacterized LOC124903716

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • hepatocellular carcinoma associated transcript 5 (non-protein coding)
  • hepatoma associated protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027756.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    FJ222407
    Related
    ENST00000569990.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    73092349..73093774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    78910078..78911503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001101347.1: Suppressed sequence

    Description
    NM_001101347.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.