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HERC2P3 HERC2 pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 283755, updated on 6-Nov-2022

Summary

Official Symbol
HERC2P3provided by HGNC
Official Full Name
HERC2 pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:4871
See related
Ensembl:ENSG00000290376 AllianceGenome:HGNC:4871
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
D15F37S4
Summary
Predicted to enable metal ion binding activity and ubiquitin-protein transferase activity. Predicted to be involved in protein ubiquitination. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in brain (RPKM 21.2), urinary bladder (RPKM 17.1) and 25 other tissues See more
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Genomic context

See HERC2P3 in Genome Data Viewer
Location:
15q11.1-q11.2
Exon count:
26
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (20408396..20506180, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (18320251..18417997, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (20613649..20711433, complement)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903442 Neighboring gene small nucleolar RNA U13 Neighboring gene E3 ubiquitin-protein ligase HERC2 Neighboring gene golgin A6 family like 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Other Names

  • hect domain and RLD 2 pseudogene 3

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_036432.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC026495, AC138748, BC094757
    Related
    ENST00000430598.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    20408396..20506180 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021160017.1 Reference GRCh38.p14 PATCHES

    Range
    650178..747905 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    18320251..18417997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_008269.2: Suppressed sequence

    Description
    NG_008269.2: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
  2. NG_025280.1: Suppressed sequence

    Description
    NG_025280.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
  3. NM_001024682.1: Suppressed sequence

    Description
    NM_001024682.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.