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ALDH1A2-AS1 ALDH1A2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 283665, updated on 17-Jun-2024

Summary

Official Symbol
ALDH1A2-AS1provided by HGNC
Official Full Name
ALDH1A2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:27515
See related
AllianceGenome:HGNC:27515
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See ALDH1A2-AS1 in Genome Data Viewer
Location:
15q21.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (58065225..58072705)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (55867532..55875012)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (58357423..58364903)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370834 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr15:58043407-58044159 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:58044582-58045178 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6476 Neighboring gene Sharpr-MPRA regulatory region 1312 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 9465 Neighboring gene calponin 2 pseudogene Neighboring gene aldehyde dehydrogenase 1 family member A2 Neighboring gene NANOG hESC enhancer GRCh37_chr15:58341834-58342511 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:58356927-58357446 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:58357447-58357966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6477 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr15:58402780-58403979 Neighboring gene MT-CO3 pseudogene 23 Neighboring gene MT-ND3 pseudogene 12 Neighboring gene aquaporin 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147215.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC025431

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    58065225..58072705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    55867532..55875012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)