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HMGN2P46 high mobility group nucleosomal binding domain 2 pseudogene 46 [ Homo sapiens (human) ]

Gene ID: 283651, updated on 13-May-2022

Summary

Official Symbol
HMGN2P46provided by HGNC
Official Full Name
high mobility group nucleosomal binding domain 2 pseudogene 46provided by HGNC
Primary source
HGNC:HGNC:26817
See related
MIM:611314; AllianceGenome:HGNC:26817
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
D-PCa-2; C15orf21
Summary
Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in prostate (RPKM 16.7), testis (RPKM 1.2) and 1 other tissue See more
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Genomic context

See HMGN2P46 in Genome Data Viewer
Location:
15q21.1
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (45511136..45556730)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (43319297..43364888)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (45803334..45848928)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376714 Neighboring gene uncharacterized LOC124903483 Neighboring gene solute carrier family 30 member 4 Neighboring gene small nucleolar RNA U13 Neighboring gene small nucleolar RNA, H/ACA box 41B Neighboring gene developmental pluripotency associated 5 pseudogene 2 Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_022014.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK096745, AY271964

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    45511136..45556730
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    43319297..43364888
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001005266.1: Suppressed sequence

    Description
    NM_001005266.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  2. NM_001005267.1: Suppressed sequence

    Description
    NM_001005267.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  3. NM_001005268.1: Suppressed sequence

    Description
    NM_001005268.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  4. NM_001005269.1: Suppressed sequence

    Description
    NM_001005269.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
  5. NM_173609.2: Suppressed sequence

    Description
    NM_173609.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.