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LINC00641 long intergenic non-protein coding RNA 641 [ Homo sapiens (human) ]

Gene ID: 283624, updated on 23-Nov-2021

Summary

Official Symbol
LINC00641provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 641provided by HGNC
Primary source
HGNC:HGNC:27511
See related
Ensembl:ENSG00000258441
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in brain (RPKM 12.7), bone marrow (RPKM 2.6) and 22 other tissues See more
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Genomic context

See LINC00641 in Genome Data Viewer
Location:
14q11.2
Exon count:
2
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (21200079..21206900, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (21668238..21675059, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene 3 Neighboring gene myoneurin pseudogene Neighboring gene heterogeneous nuclear ribonucleoprotein C Neighboring gene RPGR interacting protein 1 Neighboring gene mitochondrial ribosomal protein S17 pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_038970.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and is intronless.
    Source sequence(s)
    AK092333, AK093962, AL157687, BC035145, DA323457
    Related
    ENST00000555379.1
  2. NR_038971.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate exon in its 5' region and lacks a portion of the 5' region found in variant 1.
    Source sequence(s)
    AK093962, AL157687, BC035145, BX537733
    Related
    ENST00000555688.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    21200079..21206900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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