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SNHG10 small nucleolar RNA host gene 10 [ Homo sapiens (human) ]

Gene ID: 283596, updated on 23-Jul-2022

Summary

Official Symbol
SNHG10provided by HGNC
Official Full Name
small nucleolar RNA host gene 10provided by HGNC
Primary source
HGNC:HGNC:27510
See related
Ensembl:ENSG00000247092 AllianceGenome:HGNC:27510
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf62; TP53LC16; LINC00063; NCRNA00063
Summary
This gene is small nucleolar RNA host gene 10 and represents a non-protein coding RNA. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2013]
Expression
Ubiquitous expression in testis (RPKM 4.9), ovary (RPKM 3.7) and 25 other tissues See more
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Genomic context

See SNHG10 in Genome Data Viewer
Location:
14q32.13
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (95532912..95534872, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (89763605..89765564, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (95999249..96001209, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 6741 Neighboring gene CRISPRi-validated cis-regulatory element chr14.2067 Neighboring gene small Cajal body-specific RNA 13 Neighboring gene glutaredoxin 5 Neighboring gene CRISPRi-validated cis-regulatory element chr14.2077

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 63
  • small nucleolar RNA host gene 10 (non-protein coding)

Clone Names

  • FLJ40557

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_033103.1 RefSeqGene

    Range
    5001..6961
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_001459.2 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) is spliced and lacks an internal segment, compared to variant 1.
    Source sequence(s)
    AL133467, CA313768
  2. NR_003138.3 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and is intronless.
    Source sequence(s)
    AL133467, CV813093
    Related
    ENST00000685307.2

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    95532912..95534872 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    89763605..89765564 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)