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RCOR2 REST corepressor 2 [ Homo sapiens (human) ]

Gene ID: 283248, updated on 5-Aug-2022

Summary

Official Symbol
RCOR2provided by HGNC
Official Full Name
REST corepressor 2provided by HGNC
Primary source
HGNC:HGNC:27455
See related
Ensembl:ENSG00000167771 MIM:616019; AllianceGenome:HGNC:27455
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable transcription corepressor activity. Predicted to be involved in histone deacetylation; negative regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of histone deacetylase complex and transcription regulator complex. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in brain (RPKM 4.9), testis (RPKM 1.7) and 14 other tissues See more
Orthologs
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Genomic context

See RCOR2 in Genome Data Viewer
Location:
11q13.1
Exon count:
14
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (63911230..63927762, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (63900584..63906517, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (63678702..63684636, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene microtubule affinity regulating kinase 2 Neighboring gene RNA, U6 small nuclear 1306, pseudogene Neighboring gene tRNA-Arg (anticodon CCT) 9-1 Neighboring gene N-alpha-acetyltransferase 40, NatD catalytic subunit Neighboring gene RNA, U6 small nuclear 45, pseudogene

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Tat tat LSD1/KDM1 and CoREST proteins are recruited to the HIV-1 LTR in response to HIV-1 Tat and formation of the LSD1/KDM1/CoREST complex functions as a co-activator of HIV-1 transcription PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables enzyme binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables transcription corepressor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
involved_in histone deacetylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in negative regulation of DNA-templated transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in chromatin IEA
Inferred from Electronic Annotation
more info
 
part_of histone deacetylase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001363648.2NP_001350577.1  REST corepressor 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AP003780
    Conserved Domains (2) summary
    pfam01448
    Location:4698
    ELM2; ELM2 domain
    cl21498
    Location:134178
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
  2. NM_173587.4NP_775858.2  REST corepressor 2 isoform 1

    See identical proteins and their annotated locations for NP_775858.2

    Status: VALIDATED

    Source sequence(s)
    AP003780, BC023587
    Consensus CDS
    CCDS8052.1
    UniProtKB/Swiss-Prot
    Q8IZ40, Q96FP3
    Related
    ENSP00000301459.4, ENST00000301459.5
    Conserved Domains (3) summary
    pfam00249
    Location:331374
    Myb_DNA-binding; Myb-like DNA-binding domain
    pfam01448
    Location:4698
    ELM2; ELM2 domain
    cl21498
    Location:134178
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    63911230..63927762 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047426828.1XP_047282784.1  REST corepressor 2 isoform X1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    63900584..63906517 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)