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LINC00900 long intergenic non-protein coding RNA 900 [ Homo sapiens (human) ]

Gene ID: 283143, updated on 17-Sep-2024

Summary

Official Symbol
LINC00900provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 900provided by HGNC
Primary source
HGNC:HGNC:27444
See related
AllianceGenome:HGNC:27444
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in skin (RPKM 3.1), adrenal (RPKM 1.0) and 18 other tissues See more
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Genomic context

See LINC00900 in Genome Data Viewer
Location:
11q23.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (115755331..115760200, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (115768476..115773345, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (115626049..115630918, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504287-115504832 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115504833-115505378 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115516252-115516892 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115526889-115527390 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115535875-115536376 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:115536377-115536876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115540906-115541406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115541407-115541907 Neighboring gene long intergenic non-protein coding RNA 2698 Neighboring gene uncharacterized LOC101928985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115612437-115612979 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:115611894-115612436 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr11:115627599-115628798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:115629978-115630512 Neighboring gene uncharacterized LOC107987165 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:115688718-115689307 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5546 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5549 Neighboring gene long intergenic non-protein coding RNA 2703 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr11:115812040-115813239

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Other Names

  • CTC-774J1.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034148.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK090602, AP002991, BX094453, DA991791

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    115755331..115760200 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    115768476..115773345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)