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IGHV3OR16-12 immunoglobulin heavy variable 3/OR16-12 (non-functional) [ Homo sapiens (human) ]

Gene ID: 28304, updated on 3-Jul-2022

Summary

Official Symbol
IGHV3OR16-12provided by HGNC
Official Full Name
immunoglobulin heavy variable 3/OR16-12 (non-functional)provided by HGNC
Primary source
HGNC:HGNC:5636
See related
IMGT/GENE-DB:IGHV3/OR16-12; AllianceGenome:HGNC:5636
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
IGHV3OR1612
Summary
Predicted to enable antigen binding activity and immunoglobulin receptor binding activity. Predicted to be involved in several processes, including activation of immune response; defense response to other organism; and phagocytosis. Predicted to be part of immunoglobulin complex, circulating. Predicted to be active in external side of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

See IGHV3OR16-12 in Genome Data Viewer
Location:
16p11.2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (33802922..33803215)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (35375297..35375590)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (33605389..33605682)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain-containing protein 36C-like Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 7 pseudogene 13 Neighboring gene ADAM metallopeptidase domain 21 pseudogene Neighboring gene immunoglobulin heavy variable 3/OR16-13 (non-functional)

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_065952.1 

    Range
    101..394
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    33802922..33803215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    35375297..35375590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)