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ZNF311 zinc finger protein 311 [ Homo sapiens (human) ]

Gene ID: 282890, updated on 19-Sep-2021

Summary

Official Symbol
ZNF311provided by HGNC
Official Full Name
zinc finger protein 311provided by HGNC
Primary source
HGNC:HGNC:13847
See related
Ensembl:ENSG00000197935
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
zf31
Expression
Broad expression in testis (RPKM 1.9), thyroid (RPKM 1.3) and 22 other tissues See more
Orthologs
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Genomic context

See ZNF311 in Genome Data Viewer
Location:
6p22.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (28994785..29005668, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (28962565..28973389, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene tRNA-Leu (anticodon AAG) 3-1 Neighboring gene CRISPRi-validated cis-regulatory element chr6.1416 Neighboring gene uncharacterized LOC105375002 Neighboring gene olfactory receptor family 2 subfamily AD member 1 pseudogene Neighboring gene uncharacterized LOC100129636 Neighboring gene olfactory receptor family 2 subfamily W member 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Common variation contributes to the genetic architecture of social communication traits.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger protein 311
Names
zinc finger protein zfp31

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001010877.5NP_001010877.2  zinc finger protein 311 isoform a

    See identical proteins and their annotated locations for NP_001010877.2

    Status: VALIDATED

    Source sequence(s)
    AL662791
    Consensus CDS
    CCDS34357.1
    UniProtKB/Swiss-Prot
    Q5JNZ3
    UniProtKB/TrEMBL
    A0A1U9X8W3
    Conserved Domains (4) summary
    smart00349
    Location:64124
    KRAB; krueppel associated box
    COG5048
    Location:273600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:361381
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:601621
    zf-H2C2_2; Zinc-finger double domain
  2. NM_001350637.4NP_001337566.1  zinc finger protein 311 isoform c

    Status: VALIDATED

    Source sequence(s)
    AL662791
    Conserved Domains (3) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:225552
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:313333
    ZF_C2H2; C2H2 Zn finger [structural motif]
  3. NM_001382360.1NP_001369289.1  zinc finger protein 311 isoform a

    Status: VALIDATED

    Source sequence(s)
    AL662791
    Related
    ENSP00000366384.3, ENST00000377179.4
    Conserved Domains (4) summary
    smart00349
    Location:64124
    KRAB; krueppel associated box
    COG5048
    Location:273600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:361381
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:601621
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    28994785..29005668 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011514511.2XP_011512813.1  zinc finger protein 311 isoform X1

    See identical proteins and their annotated locations for XP_011512813.1

    Conserved Domains (6) summary
    smart00349
    Location:97157
    KRAB; krueppel associated box
    COG5048
    Location:306633
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:394414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:420442
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:97136
    KRAB; KRAB box
    pfam13465
    Location:434459
    zf-H2C2_2; Zinc-finger double domain
  2. XM_005249019.4XP_005249076.1  zinc finger protein 311 isoform X1

    See identical proteins and their annotated locations for XP_005249076.1

    Conserved Domains (6) summary
    smart00349
    Location:97157
    KRAB; krueppel associated box
    COG5048
    Location:306633
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:394414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:420442
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:97136
    KRAB; KRAB box
    pfam13465
    Location:434459
    zf-H2C2_2; Zinc-finger double domain
  3. XM_006715067.3XP_006715130.1  zinc finger protein 311 isoform X1

    See identical proteins and their annotated locations for XP_006715130.1

    Conserved Domains (6) summary
    smart00349
    Location:97157
    KRAB; krueppel associated box
    COG5048
    Location:306633
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:394414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:420442
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:97136
    KRAB; KRAB box
    pfam13465
    Location:434459
    zf-H2C2_2; Zinc-finger double domain
  4. XM_011514513.2XP_011512815.1  zinc finger protein 311 isoform X3

    See identical proteins and their annotated locations for XP_011512815.1

    Conserved Domains (6) summary
    smart00349
    Location:88148
    KRAB; krueppel associated box
    COG5048
    Location:242620
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:385405
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:411433
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:88127
    KRAB; KRAB box
    pfam13465
    Location:425450
    zf-H2C2_2; Zinc-finger double domain
  5. XM_011514510.2XP_011512812.1  zinc finger protein 311 isoform X1

    See identical proteins and their annotated locations for XP_011512812.1

    Conserved Domains (6) summary
    smart00349
    Location:97157
    KRAB; krueppel associated box
    COG5048
    Location:306633
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:394414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:420442
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:97136
    KRAB; KRAB box
    pfam13465
    Location:434459
    zf-H2C2_2; Zinc-finger double domain
  6. XM_011514516.2XP_011512818.1  zinc finger protein 311 isoform X6

    See identical proteins and their annotated locations for XP_011512818.1

    Conserved Domains (3) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:225552
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:313333
    ZF_C2H2; C2H2 Zn finger [structural motif]
  7. XM_017010760.2XP_016866249.1  zinc finger protein 311 isoform X6

    Conserved Domains (3) summary
    smart00349
    Location:1676
    KRAB; krueppel associated box
    COG5048
    Location:225552
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:313333
    ZF_C2H2; C2H2 Zn finger [structural motif]
  8. XM_017010761.2XP_016866250.1  zinc finger protein 311 isoform X7

    Related
    ENST00000483450.1
    Conserved Domains (3) summary
    COG5048
    Location:181508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:269289
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:132
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
  9. XM_011514518.2XP_011512820.1  zinc finger protein 311 isoform X7

    See identical proteins and their annotated locations for XP_011512820.1

    Conserved Domains (3) summary
    COG5048
    Location:181508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:269289
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:132
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
  10. XM_011514514.2XP_011512816.1  zinc finger protein 311 isoform X4

    See identical proteins and their annotated locations for XP_011512816.1

    Conserved Domains (6) summary
    smart00349
    Location:72132
    KRAB; krueppel associated box
    COG5048
    Location:281608
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:369389
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:395417
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:72111
    KRAB; KRAB box
    pfam13465
    Location:409434
    zf-H2C2_2; Zinc-finger double domain
  11. XM_011514517.2XP_011512819.1  zinc finger protein 311 isoform X7

    See identical proteins and their annotated locations for XP_011512819.1

    Conserved Domains (3) summary
    COG5048
    Location:181508
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:269289
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cl02581
    Location:132
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
  12. XM_011514512.2XP_011512814.1  zinc finger protein 311 isoform X2

    See identical proteins and their annotated locations for XP_011512814.1

    Conserved Domains (6) summary
    smart00349
    Location:89149
    KRAB; krueppel associated box
    COG5048
    Location:243621
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:386406
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:412434
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:89128
    KRAB; KRAB box
    pfam13465
    Location:426451
    zf-H2C2_2; Zinc-finger double domain
  13. XM_017010758.2XP_016866247.1  zinc finger protein 311 isoform X5

    UniProtKB/Swiss-Prot
    Q5JNZ3
    UniProtKB/TrEMBL
    A0A1U9X8W3
    Conserved Domains (4) summary
    smart00349
    Location:64124
    KRAB; krueppel associated box
    COG5048
    Location:273600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:361381
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:601621
    zf-H2C2_2; Zinc-finger double domain
  14. XM_017010756.1XP_016866245.1  zinc finger protein 311 isoform X1

    Conserved Domains (6) summary
    smart00349
    Location:97157
    KRAB; krueppel associated box
    COG5048
    Location:306633
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:394414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:420442
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:97136
    KRAB; KRAB box
    pfam13465
    Location:434459
    zf-H2C2_2; Zinc-finger double domain
  15. XM_017010757.1XP_016866246.1  zinc finger protein 311 isoform X1

    Conserved Domains (6) summary
    smart00349
    Location:97157
    KRAB; krueppel associated box
    COG5048
    Location:306633
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:394414
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:420442
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:97136
    KRAB; KRAB box
    pfam13465
    Location:434459
    zf-H2C2_2; Zinc-finger double domain

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_167244.2 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    260412..271237 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_2

Genomic

  1. NT_113891.3 Reference GRCh38.p13 ALT_REF_LOCI_2

    Range
    481258..492092 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_3

Genomic

  1. NT_167245.2 Reference GRCh38.p13 ALT_REF_LOCI_3

    Range
    260391..271215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_4

Genomic

  1. NT_167246.2 Reference GRCh38.p13 ALT_REF_LOCI_4

    Range
    260346..271170 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_6

Genomic

  1. NT_167248.2 Reference GRCh38.p13 ALT_REF_LOCI_6

    Range
    260366..271190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_7

Genomic

  1. NT_167249.2 Reference GRCh38.p13 ALT_REF_LOCI_7

    Range
    304253..314973 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001318534.2: Suppressed sequence

    Description
    NM_001318534.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
  2. NM_001318535.2: Suppressed sequence

    Description
    NM_001318535.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
  3. NM_001350636.3: Suppressed sequence

    Description
    NM_001350636.3: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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