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COPZ1 COPI coat complex subunit zeta 1 [ Bos taurus (domestic cattle) ]

Gene ID: 281707, updated on 17-Aug-2024

Summary

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Official Symbol
COPZ1provided by VGNC
Official Full Name
COPI coat complex subunit zeta 1provided by VGNC
Primary source
VGNC:VGNC:27607
See related
BGD:BT18828; Ensembl:ENSBTAG00000005384
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 5 NC_037332.1 (25722729..25742045, complement)

Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene integrin subunit alpha 5 Neighboring gene uncharacterized LOC112446663 Neighboring gene zinc finger protein 385A Neighboring gene G protein-coupled receptor 84 Neighboring gene microRNA mir-148b Neighboring gene spermine synthase-like Neighboring gene nuclear factor, erythroid 2 Neighboring gene heterogeneous nuclear ribonucleoprotein A1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_037332.1 Chromosome 5 Reference ARS-UCD2.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. zeta-COP, a subunit of coatomer, is required for COP-coated vesicle assembly. Kuge O, et al. J Cell Biol, 1993 Dec. PMID 8276893, Free PMC Article
  2. The debate about transport in the Golgi--two sides of the same coin? Pelham HR, et al. Cell, 2000 Sep 15. PMID 11030615
  3. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
  4. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
  5. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPI vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coatomer subunit zeta-1
Names
Zeta-1 COP
coatomer protein complex subunit zeta 1
zeta-1-coat protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_174282.3 → NP_776707.2  coatomer subunit zeta-1

    See identical proteins and their annotated locations for NP_776707.2

    Status: PROVISIONAL

    Source sequence(s)
    BT020662
    UniProtKB/Swiss-Prot
    P35604, Q5EA44
    UniProtKB/TrEMBL
    A0AAA9THK3
    Related
    ENSBTAP00000098734.1, ENSBTAT00000096863.1
    Conserved Domains (1) summary
    cd14829
    Location:14 → 145
    Zeta-COP; zeta subunit of the F-COPI complex

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037332.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    25722729..25742045 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005206091.5 → XP_005206148.1  coatomer subunit zeta-1 isoform X1

    UniProtKB/TrEMBL
    A0AAF6YNH6
    Related
    ENSBTAP00000007088.4, ENSBTAT00000007088.5
    Conserved Domains (1) summary
    pfam01217
    Location:12 → 149
    Clat_adaptor_s; Clathrin adaptor complex small chain

  2. XM_059886106.1 → XP_059742089.1  coatomer subunit zeta-1 isoform X3

    UniProtKB/TrEMBL
    A0AAA9RYG3, A0AAA9THK3
    Related
    ENSBTAP00000078613.1, ENSBTAT00000124205.1

  3. XM_059886105.1 → XP_059742088.1  coatomer subunit zeta-1 isoform X2

  4. XM_010804818.4 → XP_010803120.1  coatomer subunit zeta-1 isoform X4

    UniProtKB/TrEMBL
    A0AAA9THK3
    Conserved Domains (1) summary
    pfam01217
    Location:12 → 149
    Clat_adaptor_s; Clathrin adaptor complex small chain
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P35604.2 GenPept UniProtKB/Swiss-Prot:P35604

Gene LinkOut

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